2L43 | pdb_00002l43

Structural basis for histone code recognition by BRPF2-PHD1 finger

PDB DOI: https://doi.org/10.2210/pdb2L43/pdb
BMRB: 17244

Classification: TRANSCRIPTION
Organism(s): Homo sapiens, synthetic construct
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2010-10-01 Released: 2011-08-31
Deposition Author(s): Qin, S., Zhang, J., Wu, J., Shi, Y.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2L43

This is version 1.2 of the entry. See complete history.

Literature

Recognition of unmodified histone H3 by the first PHD finger of Bromodomain-PHD finger protein 2 provides insights into the regulation of histone acetyltransferases MOZ and MORF

Qin, S., Zhang, J., Wu, J., Shi, Y.

To be published.

Macromolecule Content

Total Structure Weight: 9.92 kDa
Atom Count: 604
Modeled Residue Count: 80
Deposited Residue Count: 88
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Histone H3.3,LINKER,Bromodomain-containing protein 1	A	88	Homo sapiens, synthetic construct	Mutation(s): 2 Gene Names: H3-3A, H3.3A, H3F3, H3F3A, PP781, H3-3B, H3.3B, H3F3B, BRD1, BRL... H3-3A, H3.3A, H3F3, H3F3A, PP781, H3-3B, H3.3B, H3F3B, BRD1, BRL, BRPF2
UniProt & NIH Common Fund Data Resources
Find proteins for O95696 (Homo sapiens) Explore O95696 Go to UniProtKB: O95696
PHAROS: O95696 GTEx: ENSG00000100425
Find proteins for P84243 (Homo sapiens) Explore P84243 Go to UniProtKB: P84243
PHAROS: P84243 GTEx: ENSG00000132475 ENSG00000163041
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Groups	O95696 P84243
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain B [auth A] MOL2 format, chain C [auth A] MOL2 format, chain B [auth A] mmCIF format, chain C [auth A] mmCIF format, chain B [auth A]	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2011-08-31

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-08-31
Type: Initial release
Version 1.1: 2020-01-15
Changes: Data collection, Database references, Source and taxonomy, Structure summary
Version 1.2: 2024-05-01
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.