2KSG | pdb_00002ksg

Solution structure of dermcidin-1L, a human antibiotic peptide

• PDB DOI: https://doi.org/10.2210/pdb2KSG/pdb
• BMRB: 16817

• Classification: ANTIBIOTIC
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 
• Membrane Protein: Yes  OPM


• Deposited: 2010-01-04 Released: 2010-03-02 
• Deposition Author(s): Jung, H., Yang, S., Kim, J.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 20 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Solution structure and membrane interactions of dermcidin-1L, a human antibiotic peptide

Jung, H., Yang, S., Kim, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 4.83 kDa 
• Atom Count: 338 
• Modeled Residue Count: 48 
• Deposited Residue Count: 48 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dermcidin	A	48	Homo sapiens	Mutation(s): 0  Gene Names: DCD, AIDD, DSEP EC: 3.4 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P81605 (Homo sapiens) Explore P81605  Go to UniProtKB:  P81605
PHAROS:  P81605 GTEx:  ENSG00000161634

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 20 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-03-02 
Deposition Author(s): Jung, H., Yang, S., Kim, J.

Revision History  

• Version 1.0: 2010-03-02
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2022-03-16
  Changes: Data collection, Database references, Derived calculations
• Version 1.3: 2024-05-29
  Changes: Data collection