2KOL | pdb_00002kol

Solution structure of human SDF1-alpha H25R

PDB DOI: https://doi.org/10.2210/pdb2KOL/pdb
BMRB: 16519

Classification: CYTOKINE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2009-09-24 Released: 2010-10-06
Deposition Author(s): Volkman, B.F., Ziarek, J.J., Peterson, F.C., Veldkamp, C.T.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2KOL

This is version 1.5 of the entry. See complete history.

Literature

Solution structure of human SDF1-alpha H25R

Ziarek, J.J., Veldkamp, C.T., Peterson, F.C., Volkman, B.F.

To be published.

Macromolecule Content

Total Structure Weight: 8 kDa
Atom Count: 560
Modeled Residue Count: 68
Deposited Residue Count: 68
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Stromal cell-derived factor 1	A	68	Homo sapiens	Mutation(s): 1 Gene Names: CXCL12, SDF1, SDF1A, SDF1B
UniProt & NIH Common Fund Data Resources
Find proteins for P48061 (Homo sapiens) Explore P48061 Go to UniProtKB: P48061
PHAROS: P48061 GTEx: ENSG00000107562
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P48061
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: target function

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2010-10-06

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-10-06
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2020-02-26
Changes: Data collection, Database references, Other
Version 1.3: 2021-10-13
Changes: Database references
Version 1.4: 2023-06-14
Changes: Other
Version 1.5: 2024-11-20
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.