2KJX | pdb_00002kjx

Solution structure of the extracellular domain of JTB


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

The structure of the extracellular domain of the jumping translocation breakpoint protein reveals a variation of the midkine fold.

Rousseau, F.Pan, B.Fairbrother, W.J.Bazan, J.F.Lingel, A.

(2012) J Mol Biology 415: 22-28

  • DOI: https://doi.org/10.1016/j.jmb.2011.10.048
  • Primary Citation Related Structures: 
    2KJX

  • PubMed Abstract: 

    Jumping Translocation Breakpoint (JTB) is an orphan receptor that is conserved from nematodes to humans and whose gene expression in humans is strikingly upregulated in diverse types of cancers. Translocations occur frequently at the hJTB genomic locus, leading to multiple copies of a truncated JTB gene, which potentially encodes a soluble secreted ectodomain. In addition, JTB and its orthologs likely represent a unique and ancient protein family since homologs could not be identified by direct sequence comparison. In the present study, we have determined the NMR solution structure of the N-terminal ectodomain of human JTB, showing that its fold architecture is a new variant of a three-β-strand antiparallel β-meander. The JTB structure has a distant relationship to the midkine/pleiotrophin fold, particularly in the conservation of distinctive disulfide bridge patterns. The structure of this newly characterized small cysteine-rich domain suggests potential involvement of JTB in interactions with proteins or extracellular matrix and may help to uncover the elusive biological functions of this protein.


  • Organizational Affiliation
    • Department of Early Discovery Biochemistry, South San Francisco, CA 94080, USA.

Macromolecule Content 

  • Total Structure Weight: 7.3 kDa 
  • Atom Count: 505 
  • Modeled Residue Count: 65 
  • Deposited Residue Count: 65 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Jumping translocation breakpoint protein65Homo sapiensMutation(s): 0 
Gene Names: JTB
UniProt & NIH Common Fund Data Resources
Find proteins for O76095 (Homo sapiens)
Explore O76095 
Go to UniProtKB:  O76095
PHAROS:  O76095
GTEx:  ENSG00000143543 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO76095
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-08-11
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2011-11-23
    Changes: Database references
  • Version 1.3: 2012-04-18
    Changes: Database references
  • Version 1.4: 2024-10-30
    Changes: Data collection, Database references, Structure summary