2KJX

Solution structure of the extracellular domain of JTB


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-100% 15N] JTB, 50 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM sodium azide90% H2O/10% D2O0.25.6ambient298
22D 1H-13C HSQC1 mM [U-100% 13C; U-100% 15N] JTB, 50 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM sodium azide90% H2O/10% D2O0.25.6ambient298
32D 1H-1H NOESY1 mM JTB, 50 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM sodium azide100% D2O0.25.6ambient298
43D HNCA1 mM [U-100% 13C; U-100% 15N] JTB, 50 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM sodium azide90% H2O/10% D2O0.25.6ambient298
53D CBCA(CO)NH1 mM [U-100% 13C; U-100% 15N] JTB, 50 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM sodium azide90% H2O/10% D2O0.25.6ambient298
63D HNCACB1 mM [U-100% 13C; U-100% 15N] JTB, 50 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM sodium azide90% H2O/10% D2O0.25.6ambient298
73D HNHA1 mM [U-100% 13C; U-100% 15N] JTB, 50 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM sodium azide90% H2O/10% D2O0.25.6ambient298
83D HNHB1 mM [U-100% 13C; U-100% 15N] JTB, 50 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM sodium azide90% H2O/10% D2O0.25.6ambient298
93D H(CCO)NH1 mM [U-100% 13C; U-100% 15N] JTB, 50 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM sodium azide90% H2O/10% D2O0.25.6ambient298
103D C(CO)NH1 mM [U-100% 13C; U-100% 15N] JTB, 50 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM sodium azide90% H2O/10% D2O0.25.6ambient298
113D HCCH-TOCSY1 mM [U-100% 13C; U-100% 15N] JTB, 50 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM sodium azide90% H2O/10% D2O0.25.6ambient298
123D 1H-15N NOESY1 mM [U-100% 13C; U-100% 15N] JTB, 50 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM sodium azide90% H2O/10% D2O0.25.6ambient298
133D 1H-13C NOESY1 mM [U-100% 13C; U-100% 15N] JTB, 50 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM sodium azide90% H2O/10% D2O0.25.6ambient298
143D HBHA(CO)NH1 mM [U-100% 13C; U-100% 15N] JTB, 50 mM sodium phosphate, 150 mM sodium chloride, 0.1 mM sodium azide90% H2O/10% D2O0.25.6ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX600
2BrukerDRX800
NMR Refinement
MethodDetailsSoftware
simulated annealingDistance restraints were derived from 15N- or 13C-resolved 3D NOESY experiments and a 2D homonuclear 1H NOESY experiment. Restraints for the backbone angles phi and psi were derived from 3J(HN,Ha) coupling constants and TALOS. Stereospecific assignments of Leu, Val methyl groups were obtained using a 10% fractionally 13C-labeled sample. For the definition of H-bonds, slowly exchanging amide protons were identified from 1H, 15N correlation experiments after redissolving lyophilized protein in D2O.TOPSPIN
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTOPSPINBruker
2data analysisCCPNCCPN
3data analysisTALOSCornilescu, Delaglio and Bax
4structure solutionCNSBrunger, Adams, Clore, Gros, Nilges and Read
5refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read