2JW6 | pdb_00002jw6

Solution structure of the DEAF1 MYND domain

PDB DOI: https://doi.org/10.2210/pdb2JW6/pdb
Entry: 2JW6 supersedes: 2FV6

Classification: TRANSCRIPTION
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-10-08 Released: 2007-12-25
Deposition Author(s): Spadaccini, R., Perrin, H., Bottomley, M., Ansieu, S., Sattler, M.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2JW6

This is version 1.3 of the entry. See complete history.

Literature

Retraction notice to "Structure and functional analysis of the MYND domain" [J. Mol. Biol. (2006) 358, 498-508].

Spadaccini, R., Perrin, H., Bottomley, M.J., Ansieau, S., Sattler, M.

(2008) J Mol Biology 376: 1523-1523

PubMed: 18286714 Search on PubMed
DOI: https://doi.org/10.1016/j.jmb.2008.01.071
Primary Citation Related Structures:
2JW6

Macromolecule Content

Total Structure Weight: 6.01 kDa
Atom Count: 328
Modeled Residue Count: 42
Deposited Residue Count: 52
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Deformed epidermal autoregulatory factor 1 homolog	A	52	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for O75398 (Homo sapiens) Explore O75398 Go to UniProtKB: O75398
PHAROS: O75398 GTEx: ENSG00000177030
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O75398
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain B [auth A] MOL2 format, chain C [auth A] MOL2 format, chain B [auth A] mmCIF format, chain C [auth A] mmCIF format, chain B [auth A]	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2007-12-25

Deposition Author(s):

This entry supersedes: 2FV6

Revision History (Full details and data files)

Version 1.0: 2007-12-25
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2013-04-10
Changes: Database references
Version 1.3: 2024-05-01
Changes: Data collection, Database references, Derived calculations

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.