2JW6 | pdb_00002jw6

Solution structure of the DEAF1 MYND domain

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D 1H-13C NOESY	0,4 mM [U-100% 13C; U-100% 15N] mynd, 4 mM DTT, 20 mM sodium phosphate, 100 mM sodium chloride, 90% H2O, 10% D2O	90% H2O/10% D2O	20mM phosphate, 100mM NaCl	6.8	ambient atm	295
2	3D HNCA	0,4 mM [U-100% 13C; U-100% 15N] mynd, 4 mM DTT, 20 mM sodium phosphate, 100 mM sodium chloride, 90% H2O, 10% D2O	90% H2O/10% D2O	20mM phosphate, 100mM NaCl	6.8	ambient atm	295
3	3D 1H-15N NOESY	0,4 mM [U-100% 13C; U-100% 15N] mynd, 4 mM DTT, 20 mM sodium phosphate, 100 mM sodium chloride, 90% H2O, 10% D2O	90% H2O/10% D2O	20mM phosphate, 100mM NaCl	6.8	ambient atm	295

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	DRX	900
2	Bruker	DRX	800
3	Bruker	DRX	600

NMR Refinement
Method	Details	Software
simulated annealing, molecular dynamics	molecular dynamics The NMR ensemble has been refined in a shell of water molecules. refinement details can be found in the jrnl citation above and linge et al. structures were calculated with aria 1.2 in combination with cns.	NMRPipe

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	chemical shift assignment	NMRView		Johnson, One Moon Scientific
3	data analysis	NMRView		Johnson, One Moon Scientific
4	structure solution	ARIA		Linge, O'Donoghue and Nilges
5	refinement	ARIA		Linge, O'Donoghue and Nilges