2J6F

N-TERMINAL SH3 DOMAIN OF CMS (CD2AP HUMAN HOMOLOG) BOUND TO CBL-B PEPTIDE

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.190 

wwPDB Validation 3D Report Full Report


This is version 2.1 of the entry. See complete history. 

Literature

Atypical Polyproline Recognition by the Cms N- Terminal SH3 Domain.

Moncalian, G., Cardenes, N., Deribe, Y.L., Spinola-Amilibia, M., Dikic, I., Bravo, J.

(2006) J.Biol.Chem. 281: 38845

  • DOI: 10.1074/jbc.M606411200
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 

    • The CIN85/CMS (human homologs of mouse SH3KBP1/CD2AP) family of endocytic adaptor proteins has the ability to engage multiple effectors and couple cargo trafficking with the cytoskeleton. CIN85 and CMS (Cas ligand with multiple Src homology 3 (SH3) d ...

    The CIN85/CMS (human homologs of mouse SH3KBP1/CD2AP) family of endocytic adaptor proteins has the ability to engage multiple effectors and couple cargo trafficking with the cytoskeleton. CIN85 and CMS (Cas ligand with multiple Src homology 3 (SH3) domains) facilitate the formation of large multiprotein complexes required for an efficient internalization of cell surface receptors. It has recently been shown that c-Cbl/Cbl-b could mediate the formation of a ternary complex between one c-Cbl/Cbl-b molecule and two SH3 domains of CIN85, important for the ability of Cbl to promote epidermal growth factor receptor down-regulation. To further investigate whether multimerization is conserved within the family of adaptor proteins, we have solved the crystal structures of the CMS N-terminal SH3 domain-forming complexes with Cbl-b- and CD2-derived peptides. Together with biochemical evidence, the structures support the notion that, despite clear differences in the interaction surface, both Cbl-b and CD2 can mediate multimerization of N-terminal CMS SH3 domains. Detailed analyses on the interacting surfaces also provide the basis for a differential Cbl-b molecular recognition of CMS and CIN85.

    Organizational Affiliation: 

    Signal Transduction Group, Structural Biology and Biocomputing Programme, Centro Nacional de Investigaciones Oncológicas, Melchor Fernández Almagro 3, E-28029 Madrid, Spain.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CD2-ASSOCIATED PROTEIN
A
62Homo sapiensMutation(s): 0 
Gene Names: CD2AP
Find proteins for Q9Y5K6 (Homo sapiens)
Go to Gene View: CD2AP
Go to UniProtKB:  Q9Y5K6
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
E3 UBIQUITIN-PROTEIN LIGASE CBL-B
C
11Homo sapiensMutation(s): 0 
Gene Names: CBLB (RNF56)
EC: 2.3.2.27
Find proteins for Q13191 (Homo sapiens)
Go to Gene View: CBLB
Go to UniProtKB:  Q13191
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.190 
  • Space Group: I 4 2 2
Unit Cell:
Length (Å)Angle (°)
a = 66.510α = 90.00
b = 66.510β = 90.00
c = 67.779γ = 90.00
Software Package:
Software NamePurpose
AMoREphasing
SCALEPACKdata scaling
REFMACrefinement
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-10-11
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance
  • Version 2.0: 2017-07-05
    Type: Advisory, Atomic model, Data collection, Derived calculations
  • Version 2.1: 2018-10-24
    Type: Data collection, Derived calculations