2IGX

Achiral, Cheap and Potent Inhibitors of Plasmepsins II


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.200 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Achiral, Cheap, and Potent Inhibitors of Plasmepsins I, II, and IV.

Boss, C.Corminboeuf, O.Grisostomi, C.Meyer, S.Jones, A.F.Prade, L.Binkert, C.Fischli, W.Weller, T.Bur, D.

(2006) Chemmedchem 1: 1341-1345


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Plasmepsin-2
A
329Plasmodium falciparumMutation(s): 0 
Find proteins for Q17SC2 (Plasmodium falciparum)
Go to UniProtKB:  Q17SC2
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
A1T
Query on A1T

Download SDF File 
Download CCD File 
A
5-PENTYL-N-{[4'-(PIPERIDIN-1-YLCARBONYL)BIPHENYL-4-YL]METHYL}-N-[1-(PYRIDIN-2-YLMETHYL)PIPERIDIN-4-YL]PYRIDINE-2-CARBOXAMIDE
C41 H49 N5 O2
RBZSSVVTHOATHE-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
A1TIC50: 54 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.200 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 67.476α = 90.00
b = 154.743β = 90.00
c = 39.257γ = 90.00
Software Package:
Software NamePurpose
MAR345data collection
REFMACrefinement
CCP4data scaling
MOSFLMdata reduction
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2006-09-25 
  • Released Date: 2006-11-28 
  • Deposition Author(s): Prade, L.

Revision History 

  • Version 1.0: 2006-11-28
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Derived calculations, Version format compliance
  • Version 1.3: 2017-10-18
    Type: Refinement description