2H7A | pdb_00002h7a

NMR Structure of the Conserved Protein YcgL from Escherichia coli representing the DUF709 Family Reveals a Novel a/b/a Sandwich Fold

PDB DOI: https://doi.org/10.2210/pdb2H7A/pdb
BMRB: 7182

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Escherichia coli CFT073
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2006-06-01 Released: 2007-04-17
Deposition Author(s): Minailiuc, O.M., Vavelyuk, O., Ekiel, I., Hung, M.-Ni., Cygler, M., Gandhi, S., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 40
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2H7A

This is version 1.3 of the entry. See complete history.

Literature

NMR structure of YcgL, a conserved protein from Escherichia coli representing the DUF709 family, with a novel alpha/beta/alpha sandwich fold.

Minailiuc, O.M., Vavelyuk, O., Gandhi, S., Hung, M.N., Cygler, M., Ekiel, I.

(2007) Proteins 66: 1004-1007

PubMed: 17221885 Search on PubMed
DOI: https://doi.org/10.1002/prot.21198
Primary Citation Related Structures:
2H7A

Organizational Affiliation

Health Sector, Biotechnology Research Institute, National Research Council of Canada, 6100 Royalmount Avenue, Montreal, Quebec H4P 2R2, Canada.

Macromolecule Content

Total Structure Weight: 12.58 kDa
Atom Count: 879
Modeled Residue Count: 110
Deposited Residue Count: 110
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein ycgL	A	110	Escherichia coli CFT073	Mutation(s): 0 Gene Names: ycgL
UniProt
Find proteins for P0AB44 (Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)) Explore P0AB44 Go to UniProtKB: P0AB44
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P0AB44
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 40
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2007-04-17

Deposition Author(s):

Minailiuc, O.M.

Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

Revision History (Full details and data files)

Version 1.0: 2007-04-17
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.3: 2024-05-01
Changes: Data collection, Database references

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.