2FSY

Bacteriophage HK97 Pepsin-treated Expansion Intermediate IV


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.8 Å
  • R-Value Work: 0.337 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Capsid Conformational Sampling in HK97 Maturation Visualized by X-Ray Crystallography and Cryo-EM.

Gan, L.Speir, J.A.Conway, J.F.Lander, G.Cheng, N.Firek, B.A.Hendrix, R.W.Duda, R.L.Liljas, L.Johnson, J.E.

(2006) Structure 14: 1655-1665

  • DOI: 10.1016/j.str.2006.09.006
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Maturation of the bacteriophage HK97 capsid from a precursor (Prohead II) to the mature state (Head II) involves a 60 A radial expansion. The mature particle is formed by 420 copies of the major capsid protein organized on a T = 7 laevo lattice with ...

    Maturation of the bacteriophage HK97 capsid from a precursor (Prohead II) to the mature state (Head II) involves a 60 A radial expansion. The mature particle is formed by 420 copies of the major capsid protein organized on a T = 7 laevo lattice with each subunit covalently crosslinked to two neighbors. Well-characterized pH 4 expansion intermediates make HK97 valuable for investigating quaternary structural dynamics. Here, we use X-ray crystallography and cryo-EM to demonstrate that in the final transition in maturation (requiring neutral pH), pentons in Expansion Intermediate IV (EI-IV) reversibly sample 14 A translations and 6 degrees rotations relative to a fixed hexon lattice. The limit of this trajectory corresponds to the Head II conformation that is secured at this extent only by the formation of the final class of covalent crosslinks. Mutants that cannot crosslink or EI-IV particles that have been rendered incapable of forming the final crosslink remain in the EI-IV state.


    Organizational Affiliation

    Department of Molecular Biology, The Scripps Research Institute, La Jolla, California 92037, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
major capsid protein
A, B, C, D, E, F, G
282Enterobacteria phage HK97Mutation(s): 0 
Gene Names: 5
Find proteins for P49861 (Enterobacteria phage HK97)
Go to UniProtKB:  P49861
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.8 Å
  • R-Value Work: 0.337 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 1006.390α = 90.00
b = 1006.390β = 90.00
c = 728.693γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
DENZOdata reduction
CNSrefinement
PDB_EXTRACTdata extraction
Blu-Icedata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-02-07
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2017-10-18
    Type: Refinement description