2F8N

2.9 Angstrom X-ray structure of hybrid macroH2A nucleosomes


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.217 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Nucleosomes containing the histone domain of macroH2A: In vitro possibilities.

Chakravarthy, S.Luger, K.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Histone H3.1
A, E
136Xenopus laevisMutation(s): 0 
Find proteins for P84233 (Xenopus laevis)
Go to UniProtKB:  P84233
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Histone H4
B, F
103Xenopus laevisMutation(s): 0 
Find proteins for P62799 (Xenopus laevis)
Go to UniProtKB:  P62799
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Histone 3, H2ba
D
126Mus musculusMutation(s): 0 
Gene Names: Hist3h2ba
Find proteins for Q9D2U9 (Mus musculus)
Go to UniProtKB:  Q9D2U9
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
Histone H2B.1
H
123Xenopus laevisMutation(s): 0 
Find proteins for P02281 (Xenopus laevis)
Go to UniProtKB:  P02281
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
Core histone macro-H2A.1
G
120Homo sapiensMutation(s): 0 
Gene Names: H2AFY (MACROH2A1)
Find proteins for O75367 (Homo sapiens)
Go to Gene View: H2AFY
Go to UniProtKB:  O75367
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
Histone H2A type 1
K
149Mus musculusMutation(s): 0 
Gene Names: Hist1h2ah
Find proteins for Q8CGP6 (Mus musculus)
Go to UniProtKB:  Q8CGP6
Entity ID: 1
MoleculeChainsLengthOrganism
alpha-satellite DNA (146 bp)I,J146Homo sapiens
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.217 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 106.145α = 90.00
b = 109.272β = 90.00
c = 176.273γ = 90.00
Software Package:
Software NamePurpose
CNSrefinement
SCALEPACKdata scaling
CNSphasing
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-05-23
    Type: Initial release
  • Version 1.1: 2008-05-01
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance