2EJ4 | pdb_00002ej4

Functional and structural basis of nuclear localization signal in ZIC3 zinc finger domain: a role of conserved tryptophan residue in the zinc finger domain

PDB DOI: https://doi.org/10.2210/pdb2EJ4/pdb

Classification: GENE REGULATION
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2007-03-14 Released: 2008-02-05
Deposition Author(s): Tomizawa, T., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations,structures with the lowest energy,target function

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history.

Literature

Functional and structural basis of nuclear localization signal in ZIC3 zinc finger domain: a role of conserved tryptophan residue in the zinc finger domain

Hatayama, M., Tomizawa, T., Bouvagnet, P., Yokoyama, S., Mikoshiba, K., Kigawa, T., Aruga, J.

To be published.

Macromolecule Content

Total Structure Weight: 10.76 kDa
Atom Count: 744
Modeled Residue Count: 95
Deposited Residue Count: 95
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Zinc finger protein ZIC 3	A	95	Homo sapiens	Mutation(s): 0 Gene Names: ZIC3
UniProt & NIH Common Fund Data Resources
Find proteins for O60481 (Homo sapiens) Explore O60481 Go to UniProtKB: O60481
PHAROS: O60481 GTEx: ENSG00000156925
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O60481
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain B [auth A] MOL2 format, chain C [auth A] MOL2 format, chain B [auth A] mmCIF format, chain C [auth A] mmCIF format, chain B [auth A]	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations,structures with the lowest energy,target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-02-05

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2008-02-05
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2022-03-09
Changes: Data collection, Database references, Derived calculations
Version 1.3: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.