2CWM | pdb_00002cwm

Native Crystal Structure of NO releasing inductive lectin from seeds of the Canavalia maritima (ConM)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 
    0.237 (Depositor), 0.244 (DCC) 
  • R-Value Work: 
    0.189 (Depositor), 0.201 (DCC) 
  • R-Value Observed: 
    0.191 (Depositor) 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

Native crystal structure of a nitric oxide-releasing lectin from the seeds of Canavalia maritima

Gadelha, C.A.A.Moreno, F.B.M.B.Santi-Gadelha, T.Cajazeiras, J.B.Rocha, B.A.M.Assreuy, A.M.S.Lima Mota, M.R.Pinto, N.V.Passos Meireles, A.V.Borges, J.C.Freitas, B.T.Canduri, F.Souza, E.P.Delatorre, P.Criddle, D.N.De Azevedo Jr., W.F.Cavada, B.S.

(2005) J Struct Biol 152: 185-194

  • DOI: https://doi.org/10.1016/j.jsb.2005.07.012
  • Primary Citation Related Structures: 
    2CWM

  • PubMed Abstract: 

    Here, we report the crystallographic study of a lectin from Canavalia maritima seeds (ConM) and its relaxant activity on vascular smooth muscle, to provide new insights into the understanding of structure/function relationships of this class of proteins. ConM was crystallized and its structure determined by standard molecular replacement techniques. The amino acid residues, previously suggested incorrectly by manual sequencing, have now been determined as I17, I53, S129, S134, G144, S164, P165, S187, V190, S169, T196, and S202. Analysis of the structure indicated a dimer in the asymmetric unit, two metal binding sites per monomer, and loops involved in the molecular oligomerization. These confer 98% similarity between ConM and other previously described lectins, derived from Canavalia ensiformis and Canavalia brasiliensis. Our functional data indicate that ConM exerts a concentration-dependent relaxant action on isolated aortic rings that probably occurs via an interaction with a specific lectin-binding site on the endothelium, resulting in a release of nitric oxide.


  • Organizational Affiliation
    • BioMol-Lab/Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Ceará, Brazil.

Macromolecule Content 

  • Total Structure Weight: 51.18 kDa 
  • Atom Count: 3,840 
  • Modeled Residue Count: 474 
  • Deposited Residue Count: 474 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
lectinA,
B [auth D]
237Canavalia roseaMutation(s): 0 
UniProt
Find proteins for P81364 (Canavalia rosea)
Go to UniProtKB:  P81364
Find proteins for P81460 (Canavalia lineata)
Explore P81460 
Go to UniProtKB:  P81460
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP81460
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free:  0.237 (Depositor), 0.244 (DCC) 
  • R-Value Work:  0.189 (Depositor), 0.201 (DCC) 
  • R-Value Observed: 0.191 (Depositor) 
Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 67.916α = 90
b = 97.617β = 90
c = 71.021γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
MAR345data collection
CCP4data scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2006-01-17
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2017-10-11
    Changes: Refinement description
  • Version 1.4: 2024-03-13
    Changes: Data collection, Database references, Derived calculations