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Native Crystal Structure of NO releasing inductive lectin from seeds of the Canavalia maritima (ConM)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 Hepes-Na, ammonium sulfate, PEG 400, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.3 45.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.916 α = 90 b = 97.617 β = 90 c = 71.021 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 1.4270 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 25.91 97.9 0.122 34308 34238 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.06 97.51
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 24.4 34238 32507 1713 97.51 0.1987 0.19149 0.18908 0.2012 0.23692 0.2441 RANDOM 16.953
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.937 r_dihedral_angle_4_deg 22.423 r_dihedral_angle_3_deg 15.976 r_dihedral_angle_1_deg 12.601 r_scangle_it 4.288 r_scbond_it 3.096 r_angle_refined_deg 2.052 r_mcangle_it 2.025 r_mcbond_it 1.257 r_angle_other_deg 0.974
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.937 r_dihedral_angle_4_deg 22.423 r_dihedral_angle_3_deg 15.976 r_dihedral_angle_1_deg 12.601 r_scangle_it 4.288 r_scbond_it 3.096 r_angle_refined_deg 2.052 r_mcangle_it 2.025 r_mcbond_it 1.257 r_angle_other_deg 0.974 r_symmetry_hbond_refined 0.556 r_mcbond_other 0.304 r_symmetry_vdw_refined 0.239 r_nbd_refined 0.233 r_symmetry_vdw_other 0.216 r_nbd_other 0.211 r_nbtor_refined 0.189 r_xyhbond_nbd_refined 0.187 r_chiral_restr 0.141 r_metal_ion_refined 0.107 r_nbtor_other 0.104 r_bond_refined_d 0.021 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3602 Nucleic Acid Atoms Solvent Atoms 234 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement MAR345 data collection CCP4 data scaling MOLREP phasing