2CO8 | pdb_00002co8

Solution structures of the LIM domain of human NEDD9 interacting protein with calponin homology and LIM domains

• PDB DOI: https://doi.org/10.2210/pdb2CO8/pdb
• BMRB: 10247

• Classification: METAL BINDING PROTEIN
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2005-05-17 Released: 2005-11-17 
• Deposition Author(s): Sato, M., Tomizawa, T., Saito, K., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function,structures with the least restraint violations 

Literature

Solution structures of the LIM domain of human NEDD9 interacting protein with calponin homology and LIM domains

Sato, M., Tomizawa, T., Saito, K., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 8.98 kDa 
• Atom Count: 620 
• Modelled Residue Count: 82 
• Deposited Residue Count: 82 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NEDD9 interacting protein with calponin homology and LIM domains	A	82	Homo sapiens	Mutation(s): 0  Gene Names: NICAL EC: 1.6.3.1 (UniProt), 1.14.13.225 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TDZ2 (Homo sapiens) Explore Q8TDZ2  Go to UniProtKB:  Q8TDZ2
PHAROS:  Q8TDZ2 GTEx:  ENSG00000135596

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function,structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-11-17 
Deposition Author(s): Sato, M., Tomizawa, T., Saito, K., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2005-11-17
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-09
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-05-29
  Changes: Data collection