2CDH | pdb_00002cdh

ARCHITECTURE OF THE THERMOMYCES LANUGINOSUS FUNGAL FATTY ACID SYNTHASE AT 5 ANGSTROM RESOLUTION.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.20 Å

Starting Models: experimental
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This is version 1.1 of the entry. See complete history

Literature

Architecture of a Fungal Fatty Acid Synthase at 5 A Resolution.

Jenni, S.Leibundgut, M.Maier, T.Ban, N.

(2006) Science 311: 1263

  • DOI: https://doi.org/10.1126/science.1123251
  • Primary Citation Related Structures: 
    2CDH

  • PubMed Abstract: 

    All steps of fatty acid synthesis in fungi are catalyzed by the fatty acid synthase, which forms a 2.6-megadalton alpha6beta6 complex. We have determined the molecular architecture of this multienzyme by fitting the structures of homologous enzymes that catalyze the individual steps of the reaction pathway into a 5 angstrom x-ray crystallographic electron density map. The huge assembly contains two separated reaction chambers, each equipped with three sets of active sites separated by distances up to approximately 130 angstroms, across which acyl carrier protein shuttles substrates during the reaction cycle. Regions of the electron density arising from well-defined structural features outside the catalytic domains separate the two reaction chambers and serve as a matrix in which domains carrying the various active sites are embedded. The structure rationalizes the compartmentalization of fatty acid synthesis, and the spatial arrangement of the active sites has specific implications for our understanding of the reaction cycle mechanism and of the architecture of multienzymes in general.


  • Organizational Affiliation
    • Institute of Molecular Biology and Biophysics, Department of Biology, Swiss Federal Institute of Technology (ETH Zurich), 8093 Zurich, Switzerland.

Macromolecule Content 

  • Total Structure Weight: 1,091.94 kDa 
  • Atom Count: 10,404 
  • Modeled Residue Count: 10,404 
  • Deposited Residue Count: 10,404 
  • Unique protein chains: 5

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ENOYL REDUCTASE226Thermomyces lanuginosusMutation(s): 0 
Find similar proteins by:|  3D Structure
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
KETOACYL SYNTHASE406Thermomyces lanuginosusMutation(s): 0 
EC: 2.3.1.41
UniProt
Find proteins for P0A953 (Escherichia coli (strain K12))
Explore P0A953 
Go to UniProtKB:  P0A953
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A953
Sequence Annotations
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
KETOACYL REDUCTASE244Thermomyces lanuginosusMutation(s): 0 
EC: 1.1.1.100
UniProt
Find proteins for Q93X62 (Brassica napus)
Explore Q93X62 
Go to UniProtKB:  Q93X62
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ93X62
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
DEHYDRATASE248Thermomyces lanuginosusMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.20 Å
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 217α = 90
b = 415β = 111.5
c = 222γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-03-07
    Type: Initial release
  • Version 1.1: 2024-02-14
    Changes: Data collection, Database references, Refinement description