2ANU

Crystal structure of Predicted metal-dependent phosphoesterase (PHP family) (tm0559) from THERMOTOGA MARITIMA at 2.40 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.169 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Crystal structure of Predicted metal-dependent phosphoesterase (PHP family) (tm0559) from THERMOTOGA MARITIMA at 2.40 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
hypothetical protein TM0559A, B, C, D, E, F255Thermotoga maritima MSB8Mutation(s): 6 
Gene Names: tm0559TM_0559
UniProt
Find proteins for Q9WZ29 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
Explore Q9WZ29 
Go to UniProtKB:  Q9WZ29
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download Ideal Coordinates CCD File 
AA [auth D] , BA [auth D] , CA [auth D] , DA [auth D] , G [auth A] , GA [auth E] , H [auth A] , HA [auth E] , 
AA [auth D],  BA [auth D],  CA [auth D],  DA [auth D],  G [auth A],  GA [auth E],  H [auth A],  HA [auth E],  I [auth A],  IA [auth E],  J [auth A],  JA [auth E],  N [auth B],  NA [auth F],  O [auth B],  OA [auth F],  P [auth B],  PA [auth F],  Q [auth B],  QA [auth F],  T [auth C],  U [auth C],  V [auth C],  W [auth C]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
EA [auth D] , FA [auth D] , K [auth A] , KA [auth E] , L [auth A] , LA [auth E] , M [auth A] , MA [auth E] , 
EA [auth D],  FA [auth D],  K [auth A],  KA [auth E],  L [auth A],  LA [auth E],  M [auth A],  MA [auth E],  R [auth B],  RA [auth F],  S [auth B],  SA [auth F],  X [auth C],  Y [auth C],  Z [auth C]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D, E, FL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 111.307α = 90
b = 111.307β = 90
c = 383.222γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
SCALAdata scaling
PDB_EXTRACTdata extraction
MOSFLMdata reduction
CCP4data scaling
SHELXEmodel building

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-10-18
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Advisory, Derived calculations, Source and taxonomy, Version format compliance
  • Version 1.3: 2017-10-25
    Changes: Author supporting evidence