2ANU | pdb_00002anu

Crystal structure of Predicted metal-dependent phosphoesterase (PHP family) (tm0559) from THERMOTOGA MARITIMA at 2.40 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d2anuf_	Alpha and beta proteins (a/b)	7-stranded beta/alpha barrel	PHP domain-like	PHP domain	Hypothetical protein TM0559	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
E	d2anue_	Alpha and beta proteins (a/b)	7-stranded beta/alpha barrel	PHP domain-like	PHP domain	Hypothetical protein TM0559	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
D	d2anud_	Alpha and beta proteins (a/b)	7-stranded beta/alpha barrel	PHP domain-like	PHP domain	Hypothetical protein TM0559	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
C	d2anuc_	Alpha and beta proteins (a/b)	7-stranded beta/alpha barrel	PHP domain-like	PHP domain	Hypothetical protein TM0559	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
B	d2anub_	Alpha and beta proteins (a/b)	7-stranded beta/alpha barrel	PHP domain-like	PHP domain	Hypothetical protein TM0559	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
A	d2anua1	Alpha and beta proteins (a/b)	7-stranded beta/alpha barrel	PHP domain-like	PHP domain	Hypothetical protein TM0559	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	PHP domain-like	8037180	3000312	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	PHP domain-like	8037180	3000312	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PHP domain-like	8037180	3000312	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PHP domain-like	8037180	3000312	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PHP domain-like	8037180	3000312	SCOP2B (2022-06-29)
A	SCOP2 Family	PHP domain	8024801	4000443	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PHP domain-like	8037180	3000312	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	PF27526	e2anuF1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: PF27526	ECOD (v294.1)
E	PF27526	e2anuE1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: PF27526	ECOD (v294.1)
D	PF27526	e2anuD1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: PF27526	ECOD (v294.1)
C	PF27526	e2anuC1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: PF27526	ECOD (v294.1)
B	PF27526	e2anuB1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: PF27526	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
E	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
D	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
C	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
B	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
A	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	hypothetical protein TM0559	5'-3' RNA exonuclease activity 5'-3' exonuclease activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA exonuclease activity, producing 5'-phosphomonoesters RNA exonuclease activity RNA nuclease activity hydrolase activity hydrolase activity, acting on ester bonds nuclease activity exonuclease activity catalytic activity DNA exonuclease activity 5'-3' DNA exonuclease activity 5'-3' RNA exonuclease activity 5'-3' exonuclease activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA exonuclease activity, producing 5'-phosphomonoesters RNA exonuclease activity RNA nuclease activity hydrolase activity hydrolase activity, acting on ester bonds nuclease activity exonuclease activity catalytic activity DNA exonuclease activity 5'-3' DNA exonuclease activity DNA exonuclease activity, producing 5'-phosphomonoesters DNA nuclease activity catalytic activity, acting on DNA cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR016195	Polymerase/histidinol phosphatase-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR003141	Polymerase/histidinol phosphatase, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR052018	PHP domain-containing protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.