1K5C
Endopolygalacturonase I from Stereum purpureum at 0.96 A resolution
- PDB DOI: https://doi.org/10.2210/pdb1K5C/pdb
- Classification: HYDROLASE
- Organism(s): Chondrostereum purpureum
- Mutation(s): No
- Deposited: 2001-10-10 Released: 2002-06-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 0.96 Å
- R-Value Free: 0.140
- R-Value Work: 0.114
- R-Value Observed: 0.115
This is version 1.3 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ENDOPOLYGALACTURONASE | 335 | Chondrostereum purpureum | Mutation(s): 0 EC: 3.2.1.15 |  | |
UniProt | |||||
Find proteins for P79074 (Chondrostereum purpureum) Explore P79074 Go to UniProtKB: P79074 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P79074 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | B [auth A], C [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
| GOL Query on GOL | E [auth A], F [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| CL Query on CL | D [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 0.96 Å
- R-Value Free: 0.140
- R-Value Work: 0.114
- R-Value Observed: 0.115
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 46.396 | α = 72.5 |
| b = 52.023 | β = 68.93 |
| c = 37.344 | γ = 69.24 |
| Software Name | Purpose |
|---|---|
| MOSFLM | data reduction |
| SCALA | data scaling |
| SOLVE | phasing |
| SHELXL-97 | refinement |
| CCP4 | data scaling |
Entry History
Deposition Data
- Released Date: 2002-06-05 Deposition Author(s): Shimizu, T., Nakatsu, T., Miyairi, K., Okuno, T., Kato, H.
Revision History (Full details and data files)
- Version 1.0: 2002-06-05
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary
