1CA2

REFINED STRUCTURE OF HUMAN CARBONIC ANHYDRASE II AT 2.0 ANGSTROMS RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Refined structure of human carbonic anhydrase II at 2.0 A resolution.

Eriksson, A.E.Jones, T.A.Liljas, A.

(1988) Proteins 4: 274-282

  • DOI: 10.1002/prot.340040406
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • The structure of human erythrocytic carbonic anhydrase II has been refined by constrained and restrained structure-factor least-squares refinement at 2.0 A resolution. The conventional crystallographic R value is 17.3%. Of 167 solvent molecules assoc ...

    The structure of human erythrocytic carbonic anhydrase II has been refined by constrained and restrained structure-factor least-squares refinement at 2.0 A resolution. The conventional crystallographic R value is 17.3%. Of 167 solvent molecules associated with the protein, four are buried and stabilize secondary structure elements. The zinc ion is ligated to three histidyl residues and one water molecule in a nearly tetrahedral geometry. In addition to the zinc-bound water, seven more water molecules are identified in the active site. Assuming that Glu-106 is deprotonated at pH 8.5, some of the hydrogen bond donor-acceptor relations in the active site can be assigned and are described here in detail. The O gamma 1 atom of Thr-199 donates its proton to the O epsilon 1 atom of Glu-106 and can function as a hydrogen bond acceptor only in additional hydrogen bonds.


    Related Citations: 
    • Crystallographic Studies of Inhibitor Binding Sites in Human Carbonic Anhydrase II. A Pentacoordinated Binding of the Scn-Ion to the Zinc at High Ph
      Eriksson, A.E., Kylsten, P.M., Jones, T.A., Liljas, A.
      (1988) Proteins 4: 283
    • Structural Relationship of Human Erythrocyte Carbonic Anhydrase Isozymes B and C
      Notstrand, B., Vaara, I., Kannan, K.K.
      (1975) Isozymes-molecular Structure 1: 575
    • Crystal Structure of Human Erythrocyte Carbonic Anhydrase C. Vi. The Three-Dimensional Structure at High Resolution in Relation to Other Mammalian Carbonic Anhydrases
      Kannan, K.K., Liljas, A., Waara, I., Bergsten, P.-C., Lovgren, S., Strandberg, B., Bengtsson, U., Carlbom, U., Fridborg, K., Jarup, L., Petef, M.
      (1972) Cold Spring Harb Symp Quant Biol 36: 221
    • Crystal Structure of Human Carbonic Anhydrase C
      Liljas, A., Kannan, K.K., Bergsten, P.-C., Waara, I., Fridborg, K., Strandberg, B., Carlbom, U., Jarup, L., Lovgren, S., Petef, M.
      (1972) Nature New Biol 235: 131

    Organizational Affiliation

    Department of Molecular Biology, Biomedical Center, Uppsala, Sweden.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
CARBONIC ANHYDRASE II
A
259Homo sapiensMutation(s): 0 
Gene Names: CA2
EC: 4.2.1.1
Find proteins for P00918 (Homo sapiens)
Go to UniProtKB:  P00918
NIH Common Fund Data Resources
PHAROS  P00918
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 42.7α = 90
b = 41.7β = 104.6
c = 73γ = 90
Software Package:
Software NamePurpose
PROLSQrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1990-01-15
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2017-11-29
    Changes: Derived calculations, Other