1ZOV

Crystal Structure of Monomeric Sarcosine Oxidase from Bacillus sp. NS-129


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.158 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of monomeric sarcosine oxidase from Bacillus sp. NS-129 reveals multiple conformations at the active-site loop

Nagata, K.Sasaki, H.Hua, M.Okai, M.Kubota, K.Kamo, M.Ito, K.Ichikawa, T.Koyama, Y.Tanokura, M.

(2005) PROC.JPN.ACAD.,SER.B 81: 220-224


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Monomeric sarcosine oxidase
A, B
386Bacillus sp. (strain NS-129)Mutation(s): 0 
Gene Names: soxA
EC: 1.5.3.1
Find proteins for P23342 (Bacillus sp. (strain NS-129))
Go to UniProtKB:  P23342
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
FAD
Query on FAD

Download SDF File 
Download CCD File 
A, B
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.158 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 171.042α = 90.00
b = 171.042β = 90.00
c = 72.455γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
MOLREPphasing
REFMACrefinement
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-05-23
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Source and taxonomy, Version format compliance