1WDZ | pdb_00001wdz

Crystal structure of RCB domain of IRSp53

• PDB DOI: https://doi.org/10.2210/pdb1WDZ/pdb

• Classification: SIGNALING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 
• Membrane Protein: Yes  OPM


• Deposited: 2004-05-21 Released: 2005-06-07 
• Deposition Author(s): Murayama, K., Suetsugu, S., Seto, A., Shirouzu, M., Takenawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.63 Å
• R-Value Free: 
  0.297 (Depositor) 
• R-Value Work: 
  0.235 (Depositor) 
• R-Value Observed: 
  0.235 (Depositor) 

Literature

Crystal structure of RCB domain of IRSp53

Murayama, K., Suetsugu, S., Seto, A., Shirouzu, M., Takenawa, T., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 55.19 kDa 
• Atom Count: 3,712 
• Modeled Residue Count: 453 
• Deposited Residue Count: 484 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
insulin receptor substrate p53	A, B	242	Homo sapiens	Mutation(s): 0  Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UQB8 (Homo sapiens) Explore Q9UQB8  Go to UniProtKB:  Q9UQB8
PHAROS:  Q9UQB8 GTEx:  ENSG00000175866

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.63 Å
• R-Value Free:  0.297 (Depositor) 
• R-Value Work:  0.235 (Depositor) 
• R-Value Observed: 0.235 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.833	α = 90
b = 69.258	β = 110.12
c = 68.715	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-06-07 
Deposition Author(s): Murayama, K., Suetsugu, S., Seto, A., Shirouzu, M., Takenawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2005-06-07
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-03-13
  Changes: Data collection, Database references