1VLG

Crystal structure of Ferritin (TM1128) from Thermotoga maritima at 2.00 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.178 
  • R-Value Observed: 0.180 

wwPDB Validation   3D Report Full Report


This is version 1.6 of the entry. See complete history


Literature

Crystal structure of Ferritin (TM1128) from Thermotoga maritima at 2.00 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ferritin
A, B, C, D, E
A, B, C, D, E, F, G, H
176Thermotoga maritima MSB8Mutation(s): 0 
Gene Names: TM1128
UniProt
Find proteins for Q9X0L2 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
Explore Q9X0L2 
Go to UniProtKB:  Q9X0L2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9X0L2
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
AA [auth E]
BA [auth E]
FA [auth F]
J [auth A]
K [auth A]
AA [auth E],
BA [auth E],
FA [auth F],
J [auth A],
K [auth A],
L [auth A],
LA [auth H],
M [auth A],
O [auth B],
P [auth B],
Q [auth B],
U [auth C],
X [auth D],
Y [auth D]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
GOL
Query on GOL

Download Ideal Coordinates CCD File 
CA [auth E]
DA [auth E]
GA [auth F]
HA [auth F]
JA [auth G]
CA [auth E],
DA [auth E],
GA [auth F],
HA [auth F],
JA [auth G],
MA [auth H],
R [auth B],
S [auth B],
V [auth C]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
FE
Query on FE

Download Ideal Coordinates CCD File 
EA [auth F]
I [auth A]
IA [auth G]
KA [auth H]
N [auth B]
EA [auth F],
I [auth A],
IA [auth G],
KA [auth H],
N [auth B],
T [auth C],
W [auth D],
Z [auth E]
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.178 
  • R-Value Observed: 0.180 
  • Space Group: H 3 2
  • Diffraction Data: https://doi.org/10.18430/M31VLG
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 175.634α = 90
b = 175.634β = 90
c = 354.843γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
SCALAdata scaling
CNSrefinement
MOLREPphasing
MOSFLMdata reduction
CCP4data scaling
CNSphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-08-17
    Type: Initial release
  • Version 1.1: 2008-04-26
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Advisory, Derived calculations, Refinement description, Source and taxonomy, Version format compliance
  • Version 1.3: 2017-10-11
    Changes: Data collection
  • Version 1.4: 2019-07-24
    Changes: Data collection, Refinement description
  • Version 1.5: 2023-01-25
    Changes: Database references, Derived calculations
  • Version 1.6: 2023-09-20
    Changes: Data collection, Refinement description