1VBD

POLIOVIRUS (TYPE 1, MAHONEY STRAIN) COMPLEXED WITH R78206


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Work: 0.287 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structures of poliovirus complexes with anti-viral drugs: implications for viral stability and drug design.

Grant, R.A.Hiremath, C.N.Filman, D.J.Syed, R.Andries, K.Hogle, J.M.

(1994) Curr Biol 4: 784-797

  • DOI: 10.1016/s0960-9822(00)00176-7
  • Primary Citation of Related Structures:  
    1VBD, 1VBC, 1VBB, 1VBA, 1VBE

  • PubMed Abstract: 
  • Picornaviruses, such as the structurally related polioviruses and rhinoviruses, are important human pathogens which have been the target of major drug development efforts. Receptor-mediated uncoating and thermal inactivation of poliovirus and rhinovirus are inhibited by agents that bind to each virus by inserting into a pocket in the beta barrel of the viral capsid protein, VP1 ...

    Picornaviruses, such as the structurally related polioviruses and rhinoviruses, are important human pathogens which have been the target of major drug development efforts. Receptor-mediated uncoating and thermal inactivation of poliovirus and rhinovirus are inhibited by agents that bind to each virus by inserting into a pocket in the beta barrel of the viral capsid protein, VP1. This pocket, which is normally empty in human rhinovirus-14 (HRV14), is occupied by an unknown natural ligand in poliovirus. Structural studies of HRV14-drug complexes have shown that drug binding causes large, localized changes in the conformation of VP1.


    Related Citations: 
    • Binding of the Antiviral Drug Win51711 to the Sabin Strain of Type 3 Poliovirus: Structural Comparison with Drug Binding in Rhinovirus 14
      Hiremath, C.N., Grant, R.A., Filman, D.J., Hogle, J.M.
      (1995) Acta Crystallogr D Biol Crystallogr 51: 473
    • Role of Conformational Transitions in Poliovirus Assembly and Cell Entry
      Hogle, J.M., Syed, R., Fricks, C.E., Icenogle, J.P., Flore, O., Filman, D.J.
      (1990) New Aspects Of Positive-strand Rna Viruses --: 199
    • Structural Factors that Control Conformational Transitions and Serotype Specificity in Type 3 Poliovirus
      Filman, D.J., Syed, R., Chow, M., Macadam, A.J., Minor, P.D., Hogle, J.M.
      (1989) EMBO J 8: 1567
    • Myristylation of Picornavirus Capsid Protein Vp4 and its Structural Significance
      Chow, M., Newman, J.F., Filman, D., Hogle, J.M., Rowlands, D.J., Brown, F.
      (1987) Nature 327: 482
    • Three-Dimensional Structure of Poliovirus at 2.9 A Resolution
      Hogle, J.M., Chow, M., Filman, D.J.
      (1985) Science 229: 1358
    • The Nucleotide Sequence of Poliovirus Type 3 Leon 12 A1B: Comparison with Poliovirus Type 1
      Stanway, G., Cann, A.J., Hauptmann, R., Hughes, P., Clarke, L.D., Mountford, R.C., Minor, P.D., Schild, G.C., Almond, J.W.
      (1983) Nucleic Acids Res 11: 5629

    Organizational Affiliation

    Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115.



Macromolecules
  • Find similar proteins by:  Sequence   |   Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
POLIOVIRUS TYPE 1 MAHONEYA [auth 0]5Human poliovirus 1 MahoneyMutation(s): 0 
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
POLIOVIRUS TYPE 1 MAHONEYB [auth 1]302Human poliovirus 1 MahoneyMutation(s): 0 
EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
Find proteins for P03300 (Poliovirus type 1 (strain Mahoney))
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Go to UniProtKB:  P03300
Protein Feature View
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  • Reference Sequence
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
POLIOVIRUS TYPE 1 MAHONEYC [auth 2]272Human poliovirus 1 MahoneyMutation(s): 0 
EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
Find proteins for P03300 (Poliovirus type 1 (strain Mahoney))
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Go to UniProtKB:  P03300
Protein Feature View
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  • Reference Sequence
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
POLIOVIRUS TYPE 1 MAHONEYD [auth 3]238Human poliovirus 1 MahoneyMutation(s): 0 
EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
Find proteins for P03300 (Poliovirus type 1 (strain Mahoney))
Explore P03300 
Go to UniProtKB:  P03300
Protein Feature View
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  • Reference Sequence
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
POLIOVIRUS TYPE 1 MAHONEYE [auth 4]68Human poliovirus 1 MahoneyMutation(s): 0 
EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
Find proteins for P03300 (Poliovirus type 1 (strain Mahoney))
Explore P03300 
Go to UniProtKB:  P03300
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
J78
Query on J78

Download Ideal Coordinates CCD File 
F [auth 1](METHYLPYRIDAZINE PIPERIDINE PROPYLOXYPHENYL)ETHYLACETATE
C22 H29 N3 O3
UEIUDEUUVLYRFV-UHFFFAOYSA-N
 Ligand Interaction
MYR
Query on MYR

Download Ideal Coordinates CCD File 
G [auth 4]MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Work: 0.287 
  • Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 322.94α = 90
b = 358.04β = 90
c = 380.15γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
X-PLORphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1996-07-11
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Source and taxonomy, Version format compliance
  • Version 1.3: 2017-11-29
    Changes: Derived calculations, Other