1VBB

POLIOVIRUS (TYPE 3, SABIN STRAIN) (P3/SABIN, P3/LEON/12A(1)B) COMPLEXED WITH R80633


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Work: 0.278 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structures of poliovirus complexes with anti-viral drugs: implications for viral stability and drug design.

Grant, R.A.Hiremath, C.N.Filman, D.J.Syed, R.Andries, K.Hogle, J.M.

(1994) Curr.Biol. 4: 784-797

  • Primary Citation of Related Structures:  1VBA, 1VBC, 1VBD, 1VBE

  • PubMed Abstract: 
  • Picornaviruses, such as the structurally related polioviruses and rhinoviruses, are important human pathogens which have been the target of major drug development efforts. Receptor-mediated uncoating and thermal inactivation of poliovirus and rhinovi ...

    Picornaviruses, such as the structurally related polioviruses and rhinoviruses, are important human pathogens which have been the target of major drug development efforts. Receptor-mediated uncoating and thermal inactivation of poliovirus and rhinovirus are inhibited by agents that bind to each virus by inserting into a pocket in the beta barrel of the viral capsid protein, VP1. This pocket, which is normally empty in human rhinovirus-14 (HRV14), is occupied by an unknown natural ligand in poliovirus. Structural studies of HRV14-drug complexes have shown that drug binding causes large, localized changes in the conformation of VP1.


    Related Citations: 
    • Structural Factors that Control Conformational Transitions and Serotype Specificity in Type 3 Poliovirus
      Filman, D.J.,Syed, R.,Chow, M.,Macadam, A.J.,Minor, P.D.,Hogle, J.M.
      (1989) Embo J. 8: 1567
    • Role of Conformational Transitions in Poliovirus Assembly and Cell Entry
      Hogle, J.M.,Syed, R.,Fricks, C.E.,Icenogle, J.P.,Flore, O.,Filman, D.J.
      (1990) New Aspects of Positive-Strand RNA Viruses --: 199
    • The Nucleotide Sequence of Poliovirus Type 3 Leon 12 A1B: Comparison with Poliovirus Type 1
      Stanway, G.,Cann, A.J.,Hauptmann, R.,Hughes, P.,Clarke, L.D.,Mountford, R.C.,Minor, P.D.,Schild, G.C.,Almond, J.W.
      (1983) Nucleic Acids Res. 11: 5629
    • Three-Dimensional Structure of Poliovirus at 2.9 A Resolution
      Hogle, J.M.,Chow, M.,Filman, D.J.
      (1985) Science 229: 1358
    • Binding of the Antiviral Drug Win51711 to the Sabin Strain of Type 3 Poliovirus: Structural Comparison with Drug Binding in Rhinovirus 14
      Hiremath, C.N.,Grant, R.A.,Filman, D.J.,Hogle, J.M.
      (1995) Acta Crystallogr.,Sect.D 51: 473
    • Myristylation of Picornavirus Capsid Protein Vp4 and its Structural Significance
      Chow, M.,Newman, J.F.,Filman, D.,Hogle, J.M.,Rowlands, D.J.,Brown, F.
      (1987) Nature 327: 482


    Organizational Affiliation

    Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
POLIOVIRUS TYPE 3
0
4N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
POLIOVIRUS TYPE 3
1
300Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B)EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P03302 (Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B))
Go to UniProtKB:  P03302
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
POLIOVIRUS TYPE 3
2
271Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B)EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P03302 (Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B))
Go to UniProtKB:  P03302
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
POLIOVIRUS TYPE 3
3
235Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B)EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P03302 (Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B))
Go to UniProtKB:  P03302
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
POLIOVIRUS TYPE 3
4
68Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B)EC: 3.6.1.15, 3.4.22.28, 3.4.22.29, 2.7.7.48
Find proteins for P03302 (Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B))
Go to UniProtKB:  P03302
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MYR
Query on MYR

Download SDF File 
Download CCD File 
4
MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
 Ligand Interaction
J80
Query on J80

Download SDF File 
Download CCD File 
1
(METHYLPYRIDAZINE PIPERIDINE BUTYLOXYPHENYL)ETHYLACETATE
R80633
C23 H31 N3 O3
AQILFLLHLFBLLG-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Work: 0.278 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 321.060α = 90.00
b = 358.620β = 90.00
c = 381.820γ = 90.00
Software Package:
Software NamePurpose
X-PLORphasing
X-PLORmodel building
X-PLORrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1996-07-11
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance