Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

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Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 14818.93 
• Atom Count: 1022 
• Residue Count: 129 
• Unique protein chains: 1

1VAU

Xenon derivative of hen egg-white lysozyme

• DOI: 10.2210/pdb1VAU/pdb

• Classification: HYDROLASE
• Organism(s): Gallus gallus


• Deposited: 2004-02-19 Released: 2005-03-08 
• Deposition Author(s): Takeda, K., Miyatake, H., Park, S.Y., Kawamoto, M., Kamiya, N., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.5 Å
• R-Value Free: 0.203 
• R-Value Work: 0.187 

Literature

Multi-wavelength anomalous diffraction method for I and Xe atoms using ultra-high-energy X-rays from SPring-8

Takeda, K., Miyatake, H., Park, S.Y., Kawamoto, M., Kamiya, N., Miki, K.

(2004) J.Appl.Crystallogr. 37: 925-933

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Lysozyme C	A	129	Gallus gallus	Mutation(s): 0  Gene Names: LYZ EC: 3.2.1.17
Find proteins for P00698 (Gallus gallus) Go to Gene View: LYZ Go to UniProtKB:  P00698

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
NA	A	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N
CL	A	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M
XE	A	XENON Xe FHNFHKCVQCLJFQ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.5 Å
• R-Value Free: 0.203 
• R-Value Work: 0.187 
• Space Group: P 4₃ 2₁ 2

Unit Cell:

Length (Å)	Angle (°)
a = 78.330	α = 90.00
b = 78.330	β = 90.00
c = 36.940	γ = 90.00

Software Package:

Software Name	Purpose
HKL-2000	data collection
SHARP	phasing
SCALEPACK	data scaling
HKL-2000	data reduction
CNS	refinement

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2004-02-19 
• Released Date: 2005-03-08 
• Deposition Author(s): Takeda, K., Miyatake, H., Park, S.Y., Kawamoto, M., Kamiya, N., Miki, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History 

• Version 1.0: 2005-03-08
  Type: Initial release
• Version 1.1: 2008-04-27
  Type: Version format compliance
• Version 1.2: 2011-07-13
  Type: Version format compliance