1UZ4

Common inhibition of beta-glucosidase and beta-mannosidase by isofagomine lactam reflects different conformational intineraries for glucoside and mannoside hydrolysis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 0.165 
  • R-Value Work: 0.133 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Common Inhibition of Both Beta-Glucosidases and Beta-Mannosidases by Isofagomine Lactam Reflects Different Conformational Itineraries for Pyranoside Hydrolysis

Vincent, F.Gloster, T.M.Macdonald, J.Morland, C.Stick, R.V.Dias, F.Prates, J.Fontes, C.M.G.A.Gilbert, H.J.Davies, G.J.

(2004) Chembiochem 5: 1596


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
MAN5A
A
440Cellvibrio mixtusMutation(s): 0 
Gene Names: man5A
Find proteins for Q6QT42 (Cellvibrio mixtus)
Go to UniProtKB:  Q6QT42
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
IFL
Query on IFL

Download SDF File 
Download CCD File 
A
(3S,4R,5R)-3,4-DIHYDROXY-5-(HYDROXYMETHYL)PIPERIDIN-2-ONE
ISOFAGOMINE LACTAM
C6 H11 N O4
ARBXEMIAJIJEQI-WDCZJNDASA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
IFLKi: 400000 nM BINDINGMOAD
IFLKi: 400000 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 0.165 
  • R-Value Work: 0.133 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 91.625α = 90.00
b = 102.370β = 90.00
c = 50.356γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
AMoREphasing
SCALEPACKdata scaling
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2004-11-03
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance