☰ Navigation Tabs
Common inhibition of beta-glucosidase and beta-mannosidase by isofagomine lactam reflects different conformational intineraries for glucoside and mannoside hydrolysis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UUQ PDB ENTRY 1UUQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 24% PEG 4000 0.2M NA ACETATE PH4.6, O.2M AMMONUM SULFATE, pH 4.60
Crystal Properties Matthews coefficient Solvent content 2.4 47.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.625 α = 90 b = 102.37 β = 90 c = 50.356 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 2003-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 94.9 0.056 18.28 3.9 49493
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 95.1 0.554 3.15 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1UUQ 1.71 20 46919 2537 94.5 0.135 0.133 0.1492 0.165 0.1768 RANDOM 13.77
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.43 0.78 -0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.027 r_scangle_it 4.111 r_scbond_it 2.603 r_mcangle_it 1.615 r_angle_refined_deg 1.486 r_angle_other_deg 0.931 r_mcbond_it 0.889 r_symmetry_vdw_refined 0.405 r_nbd_other 0.253 r_symmetry_vdw_other 0.246
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.027 r_scangle_it 4.111 r_scbond_it 2.603 r_mcangle_it 1.615 r_angle_refined_deg 1.486 r_angle_other_deg 0.931 r_mcbond_it 0.889 r_symmetry_vdw_refined 0.405 r_nbd_other 0.253 r_symmetry_vdw_other 0.246 r_nbd_refined 0.209 r_symmetry_hbond_refined 0.207 r_xyhbond_nbd_refined 0.189 r_chiral_restr 0.104 r_nbtor_other 0.083 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3308 Nucleic Acid Atoms Solvent Atoms 528 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing