1UUJ | pdb_00001uuj

N-terminal domain of Lissencephaly-1 protein (Lis-1)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 
    0.246 (Depositor), 0.254 (DCC) 
  • R-Value Work: 
    0.190 (Depositor), 0.203 (DCC) 
  • R-Value Observed: 
    0.192 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 1UUJ

This is version 1.4 of the entry. See complete history

Literature

The Structure of the N-Terminal Domain of the Product of the Lissencephaly Gene Lis1 and its Functional Implications

Kim, M.H.Cooper, D.R.Oleksy, A.Devedjiev, Y.Derewenda, U.Reiner, O.Otlewski, J.Derewenda, Z.S.

(2004) Structure 12: 987

  • DOI: https://doi.org/10.1016/j.str.2004.03.024
  • Primary Citation Related Structures: 
    1UUJ

  • PubMed Abstract: 

    Mutations in the Lis1 gene result in lissencephaly (smooth brain), a debilitating developmental syndrome caused by the impaired ability of postmitotic neurons to migrate to their correct destination in the cerebral cortex. Sequence similarities suggest that the LIS1 protein contains a C-terminal seven-blade beta-propeller domain, while the structure of the N-terminal fragment includes the LisH (Lis-homology) motif, a pattern found in over 100 eukaryotic proteins with a hitherto unknown function. We present the 1.75 A resolution crystal structure of the N-terminal domain of mouse LIS1, and we show that the LisH motif is a novel, thermodynamically very stable dimerization domain. The structure explains the molecular basis of a low severity form of lissencephaly.


  • Organizational Affiliation
    • Department of Molecular Physiology and Biological Physics and Cancer Center, University of Virginia, Charlottesville, VA 22908, USA.

Macromolecule Content 

  • Total Structure Weight: 41.65 kDa 
  • Atom Count: 2,772 
  • Modeled Residue Count: 307 
  • Deposited Residue Count: 352 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE IB ALPHA SUBUNIT
A, B, C, D
88Mus musculusMutation(s): 0 
UniProt
Find proteins for P63005 (Mus musculus)
Explore P63005 
Go to UniProtKB:  P63005
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP63005
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free:  0.246 (Depositor), 0.254 (DCC) 
  • R-Value Work:  0.190 (Depositor), 0.203 (DCC) 
  • R-Value Observed: 0.192 (Depositor) 
Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 62.988α = 90
b = 111.753β = 90
c = 47.397γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
SOLVEphasing
SHARPphasing
ARP/wARPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2004-07-29
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Refinement description, Version format compliance
  • Version 1.2: 2017-06-28
    Changes: Refinement description
  • Version 1.3: 2019-05-29
    Changes: Data collection, Derived calculations, Experimental preparation
  • Version 1.4: 2024-10-23
    Changes: Data collection, Database references, Other, Structure summary