1UB9 | pdb_00001ub9

Structure of the transcriptional regulator homologue protein from Pyrococcus horikoshii OT3

PDB DOI: https://doi.org/10.2210/pdb1UB9/pdb

Classification: TRANSCRIPTION
Organism(s): Pyrococcus horikoshii OT3
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2003-04-03 Released: 2004-05-04
Deposition Author(s): Okada, U., Sakai, N., Tajika, Y., Yao, M., Watanabe, N., Tanaka, I.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free:
0.242 (Depositor), 0.242 (DCC)
R-Value Work:
0.216 (Depositor), 0.216 (DCC)

wwPDB Validation 3D Report Full Report

Validation slider image for 1UB9

This is version 1.4 of the entry. See complete history.

Literature

Structural analysis of the transcriptional regulator homolog protein from Pyrococcus horikoshii OT3.

Okada, U., Sakai, N., Yao, M., Watanabe, N., Tanaka, I.

(2006) Proteins 63: 1084-1086

PubMed: 16506234 Search on PubMed
DOI: https://doi.org/10.1002/prot.20913
Primary Citation Related Structures:
1UB9

Organizational Affiliation

Division of Biological Sciences, Graduate School of Science, Hokkaido University, Sapporo, Japan.

Macromolecule Content

Total Structure Weight: 11.4 kDa
Atom Count: 856
Modeled Residue Count: 100
Deposited Residue Count: 100
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein PH1061	A	100	Pyrococcus horikoshii OT3	Mutation(s): 0 Gene Names: PH1061
UniProt
Find proteins for O58788 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O58788 Go to UniProtKB: O58788
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O58788
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free: 0.242 (Depositor), 0.242 (DCC)
R-Value Work: 0.216 (Depositor), 0.216 (DCC)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.159	α = 90
b = 45.159	β = 90
c = 96.175	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SCALEPACK	data scaling
SHARP	phasing
CNS	refinement
HKL-2000	data reduction

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2004-05-04

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2004-05-04
Type: Initial release
Version 1.1: 2008-04-27
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance
Version 1.3: 2011-11-16
Changes: Atomic model
Version 1.4: 2023-12-27
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.