1TIA | pdb_00001tia

AN UNUSUAL BURIED POLAR CLUSTER IN A FAMILY OF FUNGAL LIPASES

• PDB DOI: https://doi.org/10.2210/pdb1TIA/pdb

• Classification: HYDROLASE(CARBOXYLIC ESTERASE)
• Organism(s): Penicillium camemberti
• Mutation(s): No 


• Deposited: 1993-12-06 Released: 1995-01-26 
• Deposition Author(s): Derewenda, U., Swenson, L., Yamaguchi, S., Wei, Y., Derewenda, Z.S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Work: 
  0.190 (Depositor) 
• R-Value Observed: 
  0.190 (Depositor) 

Literature

An unusual buried polar cluster in a family of fungal lipases.

Derewenda, U., Swenson, L., Green, R., Wei, Y., Dodson, G.G., Yamaguchi, S., Haas, M.J., Derewenda, Z.S.

(1994) Nat Struct Biol 1: 36-47

• PubMed: 7656005 
• DOI: https://doi.org/10.1038/nsb0194-36
• Primary Citation Related Structures: 
  1TIA


• PubMed Abstract: 
  

  The stability of globular proteins arises largely from the burial of non-polar amino acids in their interior. These residues are efficiently packed to eliminate energetically unfavorable cavities. Contrary to these observations, high resolution X-ray crystallographic analyses of four homologous lipases from filamentous fungi reveal an alpha/beta fold which contains a buried conserved constellation of charged and polar side chains with associated cavities containing ordered water molecules. It is possible that this structural arrangement plays an important role in interfacial catalysis.

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Organizational Affiliation: 
• Department of Biochemistry, University of Alberta, Edmonton, Canada.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 30.21 kDa 
• Atom Count: 292 
• Modeled Residue Count: 271 
• Deposited Residue Count: 279 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
LIPASE	A	279	Penicillium camemberti	Mutation(s): 0  EC: 3.1.1.3 (PDB Primary Data), 3.1.1 (UniProt)
UniProt
Find proteins for P61870 (Penicillium camembertii) Explore P61870  Go to UniProtKB:  P61870

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Work:  0.190 (Depositor) 
• R-Value Observed: 0.190 (Depositor) 

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.57	α = 79.05
b = 47.1	β = 112.14
c = 33.5	γ = 70.28

Software Package:

Software Name	Purpose
X-PLOR	model building
PROLSQ	refinement
X-PLOR	refinement
X-PLOR	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 1995-01-26 
Deposition Author(s): Derewenda, U., Swenson, L., Yamaguchi, S., Wei, Y., Derewenda, Z.S.

Revision History  

• Version 1.0: 1995-01-26
  Type: Initial release
  
• Version 1.1: 2008-03-24
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2019-07-17
  Changes: Data collection, Other, Refinement description
• Version 1.4: 2019-08-14
  Changes: Data collection, Refinement description
• Version 1.5: 2024-02-14
  Changes: Data collection, Database references