1RUO

CATABOLITE GENE ACTIVATOR PROTEIN (CAP) MUTANT/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Work: 0.213 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Aromatic hydrogen bond in sequence-specific protein DNA recognition.

Parkinson, G.Gunasekera, A.Vojtechovsky, J.Zhang, X.Kunkel, T.A.Berman, H.Ebright, R.H.

(1996) Nat Struct Biol 3: 837-841


Macromolecules

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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
PROTEIN (CATABOLITE GENE ACTIVATOR PROTEIN (CAP))E [auth A], F [auth B]209Escherichia coliMutation(s): 1 
UniProt
Find proteins for P0ACJ8 (Escherichia coli (strain K12))
Explore P0ACJ8 
Go to UniProtKB:  P0ACJ8
Protein Feature View
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  • Reference Sequence
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  • Entity ID: 1
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(*GP*CP*GP*AP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3')A [auth C], C [auth E]14N/A
    Protein Feature View
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    • Reference Sequence
    • Find similar nucleic acids by:  Sequence   |   Structure
    • Entity ID: 2
      MoleculeChainsLengthOrganismImage
      DNA (5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*TP*CP*G )-3')B [auth D], D [auth F]17N/A
      Protein Feature View
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      • Reference Sequence
      Small Molecules
      Ligands 1 Unique
      IDChainsName / Formula / InChI Key2D Diagram3D Interactions
      CMP (Subject of Investigation/LOI)
      Query on CMP

      Download Ideal Coordinates CCD File 
      G [auth A], H [auth B]ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
      C10 H12 N5 O6 P
      IVOMOUWHDPKRLL-KQYNXXCUSA-N
       Ligand Interaction
      Experimental Data & Validation

      Experimental Data

      • Method: X-RAY DIFFRACTION
      • Resolution: 2.70 Å
      • R-Value Work: 0.213 
      • Space Group: C 2 2 21
      Unit Cell:
      Length ( Å )Angle ( ˚ )
      a = 137.29α = 90
      b = 153.1β = 90
      c = 76.2γ = 90
      Software Package:
      Software NamePurpose
      PURDUEdata collection
      X-PLORrefinement
      PURDUEdata reduction

      Structure Validation

      View Full Validation Report



      Ligand Structure Quality Assessment  



      Entry History 

      Deposition Data

      Revision History  (Full details and data files)

      • Version 1.0: 1997-01-10
        Type: Initial release
      • Version 1.1: 2008-05-22
        Changes: Version format compliance
      • Version 1.2: 2011-07-13
        Changes: Version format compliance