1QDP | pdb_00001qdp

SOLUTION STRUCTURE OF ROBUSTOXIN, THE LETHAL NEUROTOXIN FROM THE FUNNEL WEB SPIDER ATRAX ROBUSTUS, NMR, 20 STRUCTURES


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: TOTAL, NOE & DIHEDRAL ENERGY 

wwPDB Validation 3D Report Full Report

Validation slider image for 1QDP

This is version 1.4 of the entry. See complete history

Literature

Solution structure of robustoxin, the lethal neurotoxin from the funnel-web spider Atrax robustus.

Pallaghy, P.K.Alewood, D.Alewood, P.F.Norton, R.S.

(1997) FEBS Lett 419: 191-196

  • DOI: https://doi.org/10.1016/s0014-5793(97)01452-x
  • Primary Citation Related Structures: 
    1QDP

  • PubMed Abstract: 

    The solution structure of robustoxin, the lethal neurotoxin from the Sydney funnel-web spider Atrax robustus, has been determined from 2D 1H NMR data. Robustoxin is a polypeptide of 42 residues cross-linked by four disulphide bonds, the connectivities of which were determined from NMR data and trial structure calculations to be 1-15, 8-20, 14-31 and 16-42 (a 1-4/2-6/3-7/5-8 pattern). The structure consists of a small three-stranded, anti-parallel beta-sheet and a series of interlocking gamma-turns at the C-terminus. It also contains a cystine knot, thus placing it in the inhibitor cystine knot motif family of structures, which includes the omega-conotoxins and a number of plant and animal toxins and protease inhibitors. Robustoxin contains three distinct charged patches on its surface, and an extended loop that includes several aromatic and non-polar residues. Both of these structural features may play a role in its binding to the voltage-gated sodium channel.


  • Organizational Affiliation
    • Biomolecular Research Institute, Parkville, Vic., Australia.

Macromolecule Content 

  • Total Structure Weight: 4.86 kDa 
  • Atom Count: 333 
  • Modeled Residue Count: 42 
  • Deposited Residue Count: 42 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ROBUSTOXIN42Atrax robustusMutation(s): 0 
UniProt
Find proteins for P01478 (Atrax robustus)
Explore P01478 
Go to UniProtKB:  P01478
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01478
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50 
  • Conformers Submitted: 20 
  • Selection Criteria: TOTAL, NOE & DIHEDRAL ENERGY 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1998-01-14
    Type: Initial release
  • Version 1.1: 2008-03-24
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2022-03-02
    Changes: Database references, Derived calculations, Other
  • Version 1.4: 2024-11-20
    Changes: Data collection, Structure summary