1PQC

HUMAN LXR BETA HORMONE RECEPTOR COMPLEXED WITH T0901317

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.199 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

The three-dimensional structure of the liver X receptor beta reveals a flexible ligand-binding pocket that can accommodate fundamentally different ligands.

Farnegardh, M., Bonn, T., Sun, S., Ljunggren, J., Ahola, H., Wilhelmsson, A., Gustafsson, J.-A., Carlquist, M.

(2003) J Biol Chem 278: 38821-38828

  • DOI: 10.1074/jbc.M304842200
  • Primary Citation of Related Structures:  
    1PQC, 1PQ9, 1PQ6

  • PubMed Abstract: 

    • The structures of the liver X receptor LXRbeta (NR1H2) have been determined in complexes with two synthetic ligands, T0901317 and GW3965, to 2.1 and 2.4 A, respectively. Together with its isoform LXRalpha (NR1H3) it regulates target genes involved in ...

    The structures of the liver X receptor LXRbeta (NR1H2) have been determined in complexes with two synthetic ligands, T0901317 and GW3965, to 2.1 and 2.4 A, respectively. Together with its isoform LXRalpha (NR1H3) it regulates target genes involved in metabolism and transport of cholesterol and fatty acids. The two LXRbeta structures reveal a flexible ligand-binding pocket that can adjust to accommodate fundamentally different ligands. The ligand-binding pocket is hydrophobic but with polar or charged residues at the two ends of the cavity. T0901317 takes advantage of this by binding to His-435 close to H12 while GW3965 orients itself with its charged group in the opposite direction. Both ligands induce a fixed "agonist conformation" of helix H12 (also called the AF-2 domain), resulting in a transcriptionally active receptor.

    Organizational Affiliation: 

    Karo Bio AB, NOVUM, Karolinska Institute, Huddinge University Hosptial, Sweden. mathias.farnegardh@karobio.se



Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Oxysterols receptor LXR-betaA, B, C, D253Homo sapiensMutation(s): 0 
Gene Names: NR1H2 OR LXRB OR UNR OR NER, NR1H2, LXRB, NER, UNR
Find proteins for P55055 (Homo sapiens)
Explore P55055 
Go to UniProtKB:  P55055
NIH Common Fund Data Resources
PHAROS  P55055
GTEx  ENSG00000131408
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
444
Query on 444
Download CCD File 
A, B, C, D
N-(2,2,2-TRIFLUOROETHYL)-N-{4-[2,2,2-TRIFLUORO-1-HYDROXY-1-(TRIFLUOROMETHYL)ETHYL]PHENYL}BENZENESULFONAMIDE
C17 H12 F9 N O3 S
SGIWFELWJPNFDH-UHFFFAOYSA-N		 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
444EC50:  75   nM  BindingDB
444IC50:  20   nM  BindingDB
444EC50:  66   nM  BindingDB
444EC50:  53   nM  BindingDB
444EC50:  800   nM  BindingDB
444IC50:  13   nM  BindingDB
444Ki:  17   nM  BindingDB
444IC50:  10   nM  BindingDB
444IC50:  9   nM  BindingDB
444EC50:  30   nM  BindingDB
444EC50:  400   nM  BindingDB
444EC50:  410   nM  BindingDB
444EC50:  21   nM  BindingDB
444EC50:  20   nM  BindingDB
444EC50:  19   nM  BindingDB
444EC50:  300   nM  BindingDB
444EC50:  16   nM  BindingDB
444IC50:  100   nM  BindingDB
444IC50:  26000   nM  BindingDB
444EC50:  15   nM  BindingDB
444Kd:  103   nM  BindingDB
444EC50:  230   nM  BindingDB
444EC50:  198   nM  BindingDB
444IC50:  70   nM  BindingDB
444EC50:  178   nM  BindingDB
444EC50:  170   nM  BindingDB
444EC50:  160   nM  BindingDB
444EC50:  156   nM  BindingDB
444IC50 :  100   nM  PDBBind
444EC50:  135   nM  BindingDB
444EC50:  140   nM  BindingDB
444EC50:  8   nM  BindingDB
444EC50:  130   nM  BindingDB
444IC50:  9000   nM  BindingDB
444EC50:  4.699999809265137   nM  BindingDB
444EC50:  120   nM  BindingDB
444EC50:  110   nM  BindingDB
444EC50:  100   nM  BindingDB
444EC50:  103   nM  BindingDB
444EC50:  90   nM  BindingDB
444EC50:  85   nM  BindingDB
444IC50:  30   nM  BindingDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.199 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.722α = 90
b = 103.262β = 90
c = 176.002γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
AMoREphasing

Structure Validation

View Full Validation Report


View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2003-09-09
    Type: Initial release
  • Version 1.1: 2008-04-29
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance