1O1J | pdb_00001o1j

Deoxy hemoglobin (A-GLY-C:V1M,L29F,H58Q; B,D:V1M,L106W)

• PDB DOI: https://doi.org/10.2210/pdb1O1J/pdb

• Classification: OXYGEN STORAGE/TRANSPORT
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2002-11-17 Released: 2002-12-18 
• Deposition Author(s): Brucker, E.A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 
  0.229 (Depositor), 0.150 (DCC) 
• R-Value Work: 
  0.150 (DCC) 
• R-Value Observed: 
  0.159 (Depositor) 

Starting Model: experimental

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A2B1 Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 2-mer - A2 

Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 64.88 kDa 
• Atom Count: 4,948 
• Modeled Residue Count: 575 
• Deposited Residue Count: 575 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemoglobin Alpha chain	A	283	Homo sapiens	Mutation(s): 5
UniProt & NIH Common Fund Data Resources
Find proteins for P69905 (Homo sapiens) Explore P69905  Go to UniProtKB:  P69905
PHAROS:  P69905 GTEx:  ENSG00000188536 ENSG00000206172

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemoglobin Beta chain	B, C [auth D]	146	Homo sapiens	Mutation(s): 2
UniProt & NIH Common Fund Data Resources
Find proteins for P68871 (Homo sapiens) Explore P68871  Go to UniProtKB:  P68871
PHAROS:  P68871 GTEx:  ENSG00000244734

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
HEM	D [auth A], E [auth A], F [auth B], G [auth D]	PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free:  0.229 (Depositor), 0.150 (DCC) 
• R-Value Work:  0.150 (DCC) 
• R-Value Observed: 0.159 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.396	α = 90
b = 83.47	β = 99.22
c = 53.643	γ = 90

Software Package:

Software Name	Purpose
SHELXL-97	refinement
XSCALE	data scaling
CNS	refinement
XDS	data scaling
XDS	data reduction
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2002-12-18 
Deposition Author(s): Brucker, E.A.

Revision History  

• Version 1.0: 2002-12-18
  Type: Initial release
  
• Version 1.1: 2008-04-26
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-08-23
  Changes: Refinement description, Source and taxonomy
• Version 1.4: 2019-07-24
  Changes: Data collection, Refinement description
• Version 1.5: 2021-10-27
  Changes: Database references, Derived calculations
• Version 1.6: 2023-08-16
  Changes: Data collection, Refinement description