Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

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Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Hetero 4-mer - A2B2 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content

• Total Structure Weight: 29324.63 
• Atom Count: 1695 
• Residue Count: 241 
• Unique protein chains: 2

1LX5

Crystal Structure of the BMP7/ActRII Extracellular Domain Complex

• DOI: 10.2210/pdb1LX5/pdb

• Classification: GROWTH FACTOR/GROWTH FACTOR RECEPTOR
• Organism(s): Mus musculus, Homo sapiens
• Expression System: Komagataella pastoris, Cricetulus griseus


• Deposited: 2002-06-04 Released: 2003-04-01 
• Deposition Author(s): Greenwald, J., Groppe, J., Kwiatkowski, W., Choe, S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.3 Å
• R-Value Free: 0.279 
• R-Value Work: 0.238 

Literature

The BMP7/ActRII Extracellular Domain Complex Provides New Insights into the Cooperative Nature of Receptor Assembly

Greenwald, J., Groppe, J., Gray, P., Wiater, E., Kwiatkowski, W., Vale, W., Choe, S.

(2003) Mol.Cell 11: 605-617

• PubMed: 12667445 
• Primary Citation of Related Structures:  
  1LXI


• PubMed Abstract: 
  

Activins and bone morphogenetic proteins (BMPs) elicit diverse biological responses by signaling through two pairs of structurally related type I and type II receptors. Here we report the crystal structure of BMP7 in complex with the extracellular domain (ECD) of the activin type II receptor. Our structure produces a compelling four-receptor model, revealing that the types I and II receptor ECDs make no direct contacts. Nevertheless, we find that truncated receptors lacking their cytoplasmic domain retain the ability to cooperatively assemble in the cell membrane. Also, the affinity of BMP7 for its low-affinity type I receptor ECD increases 5-fold in the presence of its type II receptor ECD. Taken together, our results provide a view of the ligand-mediated cooperative assembly of BMP and activin receptors that does not rely on receptor-receptor contacts.

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Organizational Affiliation: 

Structural Biology Laboratory, The Salk Institute, La Jolla, CA 92037, USA.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
bone morphogenetic protein 7	A	139	Homo sapiens	Mutation(s): 0  Gene Names: BMP7 (OP1)
Find proteins for P18075 (Homo sapiens) Go to Gene View: BMP7 Go to UniProtKB:  P18075

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
Activin Type II Receptor	B	102	Mus musculus	Mutation(s): 0  Gene Names: Acvr2a (Acvr2) EC: 2.7.11.30
Find proteins for P27038 (Mus musculus) Go to UniProtKB:  P27038

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
MAN	A	ALPHA-D-MANNOSE C6 H12 O6 WQZGKKKJIJFFOK-PQMKYFCFSA-N
BMA	A	BETA-D-MANNOSE C6 H12 O6 WQZGKKKJIJFFOK-RWOPYEJCSA-N
NDG	B	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE C8 H15 N O6 OVRNDRQMDRJTHS-PVFLNQBWSA-N
NAG	A, B	N-ACETYL-D-GLUCOSAMINE C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.3 Å
• R-Value Free: 0.279 
• R-Value Work: 0.238 
• Space Group: P 6₂ 2 2

Unit Cell:

Length (Å)	Angle (°)
a = 140.920	α = 90.00
b = 140.920	β = 90.00
c = 90.810	γ = 120.00

Software Package:

Software Name	Purpose
HKL-2000	data reduction
REFMAC	refinement
CCP4	data scaling
HKL-2000	data collection
MLPHARE	phasing
TRUNCATE	data reduction

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2002-06-04 
• Released Date: 2003-04-01 
• Deposition Author(s): Greenwald, J., Groppe, J., Kwiatkowski, W., Choe, S.

Revision History 

• Version 1.0: 2003-04-01
  Type: Initial release
• Version 1.1: 2008-04-28
  Type: Version format compliance
• Version 1.2: 2011-07-13
  Type: Derived calculations, Version format compliance
• Version 1.3: 2015-01-21
  Type: Refinement description