1LX5

Crystal Structure of the BMP7/ActRII Extracellular Domain Complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72961M sodium acetate, 0.1M imidazole, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 296K
Crystal Properties
Matthews coefficientSolvent content
4.6973.79

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 140.92α = 90
b = 140.92β = 90
c = 90.81γ = 120
Symmetry
Space GroupP 62 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152002-02-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL11-11.03SSRLBL11-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.33096.70.05516.583208320-3145
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.33.4298.60.332

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUT3.327.128150815041096.710.240.240.2380.279RANDOM69.6
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.86-0.93-1.862.78
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg24.949
r_scangle_it5.278
r_dihedral_angle_1_deg5.088
r_scbond_it3.124
r_angle_refined_deg2.978
r_mcangle_it2.512
r_mcbond_it1.279
r_symmetry_vdw_refined0.372
r_symmetry_hbond_refined0.357
r_nbd_refined0.342
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg24.949
r_scangle_it5.278
r_dihedral_angle_1_deg5.088
r_scbond_it3.124
r_angle_refined_deg2.978
r_mcangle_it2.512
r_mcbond_it1.279
r_symmetry_vdw_refined0.372
r_symmetry_hbond_refined0.357
r_nbd_refined0.342
r_xyhbond_nbd_refined0.238
r_chiral_restr0.162
r_bond_refined_d0.032
r_gen_planes_refined0.009
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1595
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms100

Software

Software
Software NamePurpose
HKL-2000data collection
TRUNCATEdata reduction
MLPHAREphasing
REFMACrefinement
HKL-2000data reduction
CCP4data scaling