Macromolecule Content

• Total Structure Weight: 12001.54 
• Atom Count: 771 
• Residue Count: 107 
• Unique protein chains: 1

1JH3

Solution structure of tyrosyl-tRNA synthetase C-terminal domain.

• DOI: 10.2210/pdb1JH3/pdb
• BMRB: 5070

• Classification: LIGASE
• Organism(s): Geobacillus stearothermophilus
• Expression System: Escherichia coli BL21(DE3)


• Deposited: 2001-06-27 Released: 2002-03-20 
• Deposition Author(s): Guijarro, J.I., Pintar, A., Prochnicka-Chalufour, A., Guez, V., Gilquin, B., Bedouelle, H., Delepierre, M.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 50 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Structure and Dynamics of the Anticodon Arm Binding Domain of Bacillus stearothermophilus Tyrosyl-tRNA Synthetase

Guijarro, J.I., Pintar, A., Prochnicka-Chalufour, A., Guez, V., Gilquin, B., Bedouelle, H., Delepierre, M.

(2002) Structure 10: 311-317

• PubMed: 12005430 


• PubMed Abstract: 
  

The structure of a recombinant protein, TyrRS(delta4), corresponding to the anticodon arm binding domain of Bacillus stearothermophilus tyrosyl-tRNA synthetase, has been solved, and its dynamics have been studied by nuclear magnetic resonance (NMR). It is the first structure described for such a domain of a tyrosyl-tRNA synthetase. It consists of a five-stranded beta sheet, packed against two alpha helices on one side and one alpha helix on the other side. A large part of the domain is structurally similar to other functionally unrelated RNA binding proteins. The basic residues known to be essential for tRNA binding and charging are exposed to the solvent on the same face of the molecule. The structure of TyrRS(delta4), together with previous mutagenesis data, allows one to delineate the region of interaction with tRNATyr.

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Related Citations: 

• Secondary structure of the C-terminal domain of the tyrosyl-transfer RNA synthetase from Bacillus stearothermophilus: a novel type of anticodon binding domain?
  Pintar, A.,Guez, V.,Castagne, C.,Bedouelle, H.,Delepierre, M.
  (1999) FEBS Lett. 446: 81




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Organizational Affiliation: 

Unité de RMN des Biomolécules, CNRS URA 2185, Institut Pasteur, Paris, France.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
TYROSYL-TRNA SYNTHETASE	A	107	Geobacillus stearothermophilus	Gene Names: tyrS EC: 6.1.1.1
Find proteins for P00952 (Geobacillus stearothermophilus) Go to UniProtKB:  P00952

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 50 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 
• Olderado: 1JH3 Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2001-06-27 
• Released Date: 2002-03-20 
• Deposition Author(s): Guijarro, J.I., Pintar, A., Prochnicka-Chalufour, A., Guez, V., Gilquin, B., Bedouelle, H., Delepierre, M.

Revision History 

• Version 1.0: 2002-03-20
  Type: Initial release
• Version 1.1: 2008-04-27
  Type: Version format compliance
• Version 1.2: 2011-07-13
  Type: Version format compliance