1JH3
Solution structure of tyrosyl-tRNA synthetase C-terminal domain.
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 1.2mM protein, U-15N | 20mM potassium phosphate, 90% H2O, 10% D2O | 6.8 | ambient | 308 | ||
2 | 2D NOESY | 1.0mM protein | 20mM potassium phosphate, 100% D2O | 6.8 | ambient | 308 | ||
3 | HMQC-J | 1.2mM protein, U-15N | 20mM potassium phosphate, 90% H2O, 10% D2O | 6.8 | ambient | 308 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Bruker | DRX | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics simulated annealing | Structures were calculated using 1352 meaningful upper distance restraints, 71 dihedral angle restraints and 33 hydrogen bonds. | XEASY |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | data analysis | XEASY | 1.2 | Bartels, Xia, Billeter, Guntert |
2 | structure solution | DYANA | 1.5 | Guntert, Mumenthaler, Herrmann |
3 | refinement | OPAL | 2.6 | Luginbuhl, Guntert, Billeter |
4 | collection | VNMR | 6.1b |