1JE3

Solution Structure of EC005 from Escherichia coli


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

An NMR approach to structural proteomics.

Yee, A.Chang, X.Pineda-Lucena, A.Wu, B.Semesi, A.Le, B.Ramelot, T.Lee, G.M.Bhattacharyya, S.Gutierrez, P.Denisov, A.Lee, C.H.Cort, J.R.Kozlov, G.Liao, J.Finak, G.Chen, L.Wishart, D.Lee, W.McIntosh, L.P.Gehring, K.Kennedy, M.A.Edwards, A.M.Arrowsmith, C.H.

(2002) Proc.Natl.Acad.Sci.USA 99: 1825-1830

  • DOI: 10.1073/pnas.042684599
  • Primary Citation of Related Structures:  
  • Also Cited By: 1JJG

  • PubMed Abstract: 
  • The influx of genomic sequence information has led to the concept of structural proteomics, the determination of protein structures on a genome-wide scale. Here we describe an approach to structural proteomics of small proteins using NMR spectroscopy ...

    The influx of genomic sequence information has led to the concept of structural proteomics, the determination of protein structures on a genome-wide scale. Here we describe an approach to structural proteomics of small proteins using NMR spectroscopy. Over 500 small proteins from several organisms were cloned, expressed, purified, and evaluated by NMR. Although there was variability among proteomes, overall 20% of these proteins were found to be readily amenable to NMR structure determination. NMR sample preparation was centralized in one facility, and a distributive approach was used for NMR data collection and analysis. Twelve structures are reported here as part of this approach, which allowed us to infer putative functions for several conserved hypothetical proteins.


    Organizational Affiliation

    Ontario Cancer Institute and Department of Medical Biophysics, University of Toronto, 101 College Street, Toronto, ON, Canada M5G 1L7.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HYPOTHETICAL 8.6 KDA PROTEIN IN AMYA-FLIE INTERGENIC REGION
A
97Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: yedF
Find proteins for P0AA31 (Escherichia coli (strain K12))
Go to UniProtKB:  P0AA31
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 
  • Olderado: 1JE3 Olderado

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2002-03-06
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance