1JDQ

Solution Structure of TM006 Protein from Thermotoga maritima


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 85 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

An NMR approach to structural proteomics.

Yee, A.Chang, X.Pineda-Lucena, A.Wu, B.Semesi, A.Le, B.Ramelot, T.Lee, G.M.Bhattacharyya, S.Gutierrez, P.Denisov, A.Lee, C.H.Cort, J.R.Kozlov, G.Liao, J.Finak, G.Chen, L.Wishart, D.Lee, W.McIntosh, L.P.Gehring, K.Kennedy, M.A.Edwards, A.M.Arrowsmith, C.H.

(2002) Proc Natl Acad Sci U S A 99: 1825-1830

  • DOI: 10.1073/pnas.042684599
  • Primary Citation of Related Structures:  
    1JCU, 1RYK, 1RYJ, 1JE3, 1JDQ, 1JRM, 1JW3, 1JW2

  • PubMed Abstract: 
  • The influx of genomic sequence information has led to the concept of structural proteomics, the determination of protein structures on a genome-wide scale. Here we describe an approach to structural proteomics of small proteins using NMR spectroscopy ...

    The influx of genomic sequence information has led to the concept of structural proteomics, the determination of protein structures on a genome-wide scale. Here we describe an approach to structural proteomics of small proteins using NMR spectroscopy. Over 500 small proteins from several organisms were cloned, expressed, purified, and evaluated by NMR. Although there was variability among proteomes, overall 20% of these proteins were found to be readily amenable to NMR structure determination. NMR sample preparation was centralized in one facility, and a distributive approach was used for NMR data collection and analysis. Twelve structures are reported here as part of this approach, which allowed us to infer putative functions for several conserved hypothetical proteins.


    Organizational Affiliation

    Ontario Cancer Institute and Department of Medical Biophysics, University of Toronto, 101 College Street, Toronto, ON, Canada M5G 1L7.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
HYPOTHETICAL PROTEIN TM0983A98Thermotoga maritimaMutation(s): 0 
Find proteins for Q9X078 (Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099))
Explore Q9X078 
Go to UniProtKB:  Q9X078
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 85 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 
  • OLDERADO: 1JDQ Olderado

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2002-02-27
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance