Macromolecule Content

• Total Structure Weight: 14839.64 
• Atom Count: 1038 
• Residue Count: 130 
• Unique protein chains: 1

1IVM

Solution structure of mouse lysozyme M

• DOI: 10.2210/pdb1IVM/pdb
• BMRB: 4751

• Classification: HYDROLASE
• Organism(s): Mus musculus
• Expression System: Komagataella pastoris


• Deposited: 2002-03-27 Released: 2002-05-08 
• Deposition Author(s): Ueda, T., Obita, T., Imoto, T.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 20 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations 

Literature

Solution structure and activity of mouse lysozyme M

Obita, T., Ueda, T., Imoto, T.

(2003) CELL.MOL.LIFE SCI. 60: 176-184

• PubMed: 12613666 


• PubMed Abstract: 
  

The three-dimensional structure of mouse lysozyme M, glycoside hydrolase, with 130 amino acids has been determined by heteronuclear NMR spectroscopy. We found that mouse lysozyme M had four alpha-helices, two 3(10)helices, and a double- and a triple-stranded anti-parallel beta-sheet, and its structure was very similar to that of hen lysozyme in solution and in the crystalline state. The pH activity profile of p-nitrophenyl penta N-acetyl-beta-D-chitopentaoside hydrolysis by mouse lysozyme M was similar to that of hen lysozyme, but the hydrolytic activity of mouse lysozyme M was lower. From analyses of binding affinities of lysozymes to a substrate analogue and internal motions of lysozymes, we suggest that the lower activity of mouse lysozyme M was due to the larger dissociation constant of its enzyme-substrate complex and the restricted internal backbone motions in the molecule.

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Organizational Affiliation: 

Graduate School of Pharmaceutical Sciences, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
lysozyme M	A	130	Mus musculus	Mutation(s): 0  Gene Names: Lyz2 (Lyz, Lyzs) EC: 3.2.1.17
Find proteins for P08905 (Mus musculus) Go to UniProtKB:  P08905

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 20 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations 
• Olderado: 1IVM Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2002-03-27 
• Released Date: 2002-05-08 
• Deposition Author(s): Ueda, T., Obita, T., Imoto, T.

Revision History 

• Version 1.0: 2002-05-08
  Type: Initial release
• Version 1.1: 2008-04-27
  Type: Version format compliance
• Version 1.2: 2011-07-13
  Type: Version format compliance