1HHF

Decaplanin second P6122-Form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.211 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Structures of Four Crystal Forms of Decaplanin

Lehmann, C.Debreczeni, J.E.Bunkoczi, G.Dauter, M.Dauter, Z.Vertesy, L.Sheldrick, G.M.

(2003) Helv.Chim.Acta 86: 1478


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DECAPLANIN
A, B, C, D
7N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ERE
Query on ERE

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A, B, C, D
(1R,3S,4R,5S)-3-amino-2,3,6-trideoxy-3-methyl-alpha-L-arabino-hexopyranose
4-EPI-VANCOSAMINE
C7 H15 N O3
OIJZDPGKNVKVBL-VZFHVOOUSA-N
 Ligand Interaction
PO4
Query on PO4

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Download CCD File 
C
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
RAM
Query on RAM

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Download CCD File 
A, B, C, D
ALPHA-L-RHAMNOSE
C6 H12 O5
SHZGCJCMOBCMKK-HGVZOGFYSA-N
 Ligand Interaction
CL
Query on CL

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A, C
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
BGC
Query on BGC

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A, B, C, D
BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
 Ligand Interaction
Biologically Interesting Molecules 1 Unique
IDChainsNameType/Class2D Diagram3D Interactions
PRD_000207
Query on PRD_000207
A,B,C,DDecaplaninGlycopeptide / Antibiotic

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.211 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 60.101α = 90.00
b = 60.101β = 90.00
c = 131.387γ = 120.00
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SHELXDphasing
SHARPphasing
DMphasing
SHELXL-97refinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2005-07-11
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Atomic model, Database references, Derived calculations, Structure summary, Version format compliance
  • Version 1.2: 2012-07-11
    Type: Other
  • Version 1.3: 2012-11-30
    Type: Other
  • Version 1.4: 2013-05-01
    Type: Non-polymer description