1E9W

Structure of the macrocycle thiostrepton solved using the anomalous dispersive contribution from sulfur


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.02 Å
  • R-Value Free: 0.142 
  • R-Value Observed: 0.112 

wwPDB Validation 3D Report Full Report


This is version 2.1 of the entry. See complete history


Literature

Structure of the Macrocycle Thiostrepton Solved Using the Anomalous Dispersive Contribution from Sulfur

Bond, C.S.Shaw, M.P.Alphey, M.S.Hunter, W.N.

(2001) Acta Crystallogr D Biol Crystallogr 57: 755

  • DOI: 10.1107/s0907444901003134
  • Primary Citation of Related Structures:  
    1E9W

  • PubMed Abstract: 
  • The structure of a tetragonal crystal form of thiostrepton has been solved using the anomalous dispersive effects of five S atoms from high-redundancy data collected to 1.33 A resolution at the Cu Kalpha wavelength. Data measured to 1.02 A resolution ...

    The structure of a tetragonal crystal form of thiostrepton has been solved using the anomalous dispersive effects of five S atoms from high-redundancy data collected to 1.33 A resolution at the Cu Kalpha wavelength. Data measured to 1.02 A resolution with a synchrotron source were used for refinement. Details of the molecular structure, intramolecular and intermolecular interactions are given.


    Organizational Affiliation

    The Wellcome Trust Biocentre, University of Dundee, Dundee DD1 5EH, Scotland, UK.



Macromolecules
  • Find similar proteins by:  Sequence   |   Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
THIOSTREPTONA19Streptomyces azureusMutation(s): 0 
Gene Names: tpdA
Find proteins for P0C8P8 (Streptomyces azureus)
Explore P0C8P8 
Go to UniProtKB:  P0C8P8
Protein Feature View
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  • Reference Sequence
Small Molecules
Modified Residues  5 Unique
IDChainsTypeFormula2D DiagramParent
BB9
Query on BB9
APEPTIDE LINKINGC3 H5 N O2 SCYS
DBU
Query on DBU
APEPTIDE LINKINGC4 H7 N O2THR
DHA
Query on DHA
APEPTIDE LINKINGC3 H5 N O2SER
MH6
Query on MH6
APEPTIDE LINKINGC3 H5 N O3SER
TS9
Query on TS9
AL-PEPTIDE LINKINGC6 H13 N O4ILE
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 1
IDChainsNameType/Class2D Diagram3D Interactions
PRD_000223
Query on PRD_000223
ATHIOSTREPTONThiopeptide /  Antibiotic

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.02 Å
  • R-Value Free: 0.142 
  • R-Value Observed: 0.112 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 26.577α = 90
b = 26.577β = 90
c = 27.436γ = 90
Software Package:
Software NamePurpose
SHELXL-97refinement
DENZOdata reduction
SCALEPACKdata scaling
SHELXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2001-03-23
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Atomic model, Database references, Derived calculations, Structure summary, Version format compliance
  • Version 1.2: 2012-11-30
    Changes: Other
  • Version 2.0: 2019-04-24
    Changes: Data collection, Derived calculations, Other, Polymer sequence
  • Version 2.1: 2019-05-22
    Changes: Data collection, Refinement description