1DY2

Murine collagen alpha1(XV), endostatin domain

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.200 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history. 

Literature

Endostatin Derived from Collagens Xv and Xviii Differ in Structural and Binding Properties, Tissue Distribution and Anti-Angiogenic Activity

Sasaki, T., Larsson, H., Tisi, D., Claesson-Welsh, L., Hohenester, E., Timpl, R.

(2000) J.Mol.Biol. 301: 1179

  • DOI: 10.1006/jmbi.2000.3996

  • PubMed Abstract: 

    • Endostatin is a fragment of the C-terminal domain NC1 of collagen XVIII that inhibits angiogenesis and tumor growth. We report the characterization of a collagen XV endostatin analogue and its parent NC1 domain, obtained by recombinant expression in ...

    Endostatin is a fragment of the C-terminal domain NC1 of collagen XVIII that inhibits angiogenesis and tumor growth. We report the characterization of a collagen XV endostatin analogue and its parent NC1 domain, obtained by recombinant expression in mammalian cells. Both NC1 domains contain a trimerization domain, a hinge region that is more sensitive to proteolysis in collagen XVIII and the endostatin domain. Unlike endostatin-XVIII, endostatin-XV does not bind zinc or heparin, which is explained by the crystal structure of endostatin-XV. The collagen XV and XVIII fragments inhibited chorioallantoic membrane angiogenesis induced by basic fibroblast growth factor (FGF-2) or vascular endothelial growth factor (VEGF), but there are striking differences depending on which cytokine is used and whether free endostatins or NC1 domains are applied. The collagen XV and XVIII fragments showed a similar binding repertoire for extracellular matrix proteins. Differences were found in the immunohistological localization in vessel walls and basement membrane zones. Together, these data indentify endostatin-XV as an angiogenesis inhibitor, which differs from endostatin-XVIII in several important functional details.

    Related Citations: 
    • Crystal Structure of the Angiogenesis Inhibitor Endostatin at 1.5 Angstrom Resolution
      Hohenester, E.,Sasaki, T.,Olsen, B.R.,Timpl, R.
      (1998) Embo J. 17: 1656
    • Endostatin: An Endogenous Inhibitor of Angiogenesis and Tumor Growth
      O'Reilly, M.S.,Boehm, T.,Shing, Y.,Fukai, N.,Vasios, G.,Lane, W.S.,Flynn, E.,Birkhead, J.R.,Olsen, B.R.,Folkman, J.
      (1997) Cell 88: 277

    Organizational Affiliation: 

    Max-Planck-Institut für Biochemie, Martinsried, D-82152, Germany.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
COLLAGEN ALPHA1(XV) CHAIN
A
180Mus musculusMutation(s): 0 
Gene Names: Col15a1
Find proteins for O35206 (Mus musculus)
Go to UniProtKB:  O35206
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4
Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.200 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 33.550α = 90.00
b = 57.700β = 90.00
c = 71.670γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
X-PLORrefinement
X-PLORphasing
MOSFLMdata reduction

Structure Validation

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View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2001-01-21
    Type: Initial release
  • Version 1.1: 2011-05-07
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2019-05-22
    Type: Data collection, Other, Refinement description