1DY2

Murine collagen alpha1(XV), endostatin domain


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.5pH 6.50

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 33.55α = 90
b = 57.7β = 90
c = 71.67γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293IMAGE PLATEMARRESEARCH1999-03-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODE

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
122097.10.0694.79225
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.1297.20.1524.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1KOE220906291.80.20.20.249RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
x_scangle_it5.7
x_mcangle_it3.8
x_scbond_it2
x_angle_deg1.5
x_mcbond_it1.3
x_bond_d0.006
x_improper_angle_d
x_angle_d_prot
x_angle_deg_prot
x_bond_d_na
RMS Deviations
KeyRefinement Restraint Deviation
x_scangle_it5.7
x_mcangle_it3.8
x_scbond_it2
x_angle_deg1.5
x_mcbond_it1.3
x_bond_d0.006
x_improper_angle_d
x_angle_d_prot
x_angle_deg_prot
x_bond_d_na
x_dihedral_angle_d_na
x_dihedral_angle_d_prot
x_angle_deg_na
x_improper_angle_d_na
x_improper_angle_d_prot
x_angle_d_na
x_angle_d
x_bond_d_prot
x_dihedral_angle_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1318
Nucleic Acid Atoms
Solvent Atoms45
Heterogen Atoms5

Software

Software
Software NamePurpose
X-PLORrefinement
MOSFLMdata reduction
SCALAdata scaling
X-PLORphasing