1DLL

The HC fragement of tetanus toxin complexed with lactose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

The structures of the H(C) fragment of tetanus toxin with carbohydrate subunit complexes provide insight into ganglioside binding.

Emsley, P.Fotinou, C.Black, I.Fairweather, N.F.Charles, I.G.Watts, C.Hewitt, E.Isaacs, N.W.

(2000) J.Biol.Chem. 275: 8889-8894

  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • The entry of tetanus neurotoxin into neuronal cells proceeds through the initial binding of the toxin to gangliosides on the cell surface. The carboxyl-terminal fragment of the heavy chain of tetanus neurotoxin contains the ganglioside-binding site, ...

    The entry of tetanus neurotoxin into neuronal cells proceeds through the initial binding of the toxin to gangliosides on the cell surface. The carboxyl-terminal fragment of the heavy chain of tetanus neurotoxin contains the ganglioside-binding site, which has not yet been fully characterized. The crystal structures of native H(C) and of H(C) soaked with carbohydrates reveal a number of binding sites and provide insight into the possible mode of ganglioside binding.


    Related Citations: 
    • Structure of the Receptor Binding Fragment HC of Tetanus Neurotoxin
      Umland, T.C.,Wingert, L.M.,Swaminathan, S.,Fury, W.F.,Schmitt, J.J.,Sax, M.
      (1997) Nat.Struct.Mol.Biol. 4: 788


    Organizational Affiliation

    Department of Chemistry, University of Glasgow, Glasgow G12 8QQ, United Kingdom.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
TETANUS TOXIN
A
441Clostridium tetani (strain Massachusetts / E88)Mutation(s): 0 
Gene Names: tetX
EC: 3.4.24.68
Find proteins for P04958 (Clostridium tetani (strain Massachusetts / E88))
Go to UniProtKB:  P04958
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
LAT
Query on LAT

Download SDF File 
Download CCD File 
A
BETA-LACTOSE
C12 H22 O11
GUBGYTABKSRVRQ-DCSYEGIMSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.201 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 67.076α = 90.00
b = 70.882β = 90.00
c = 122.238γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
CCP4phasing
DENZOdata reduction
X-GENdata reduction
CCP4model building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2000-03-24
    Type: Initial release
  • Version 1.1: 2008-04-27
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Non-polymer description, Version format compliance
  • Version 1.3: 2017-10-04
    Type: Refinement description