1BW3

THREE-DIMENSIONAL STRUCTURE IN SOLUTION OF BARWIN, A PROTEIN FROM BARLEY SEED


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Submitted: 20 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Three-dimensional structure in solution of barwin, a protein from barley seed.

Ludvigsen, S.Poulsen, F.M.

(1992) Biochemistry 31: 8783-8789

  • Primary Citation of Related Structures:  1BW4

  • PubMed Abstract: 
  • The solution structure of a 125-residue basic protein, barwin, has been determined using 1H nuclear magnetic resonance spectroscopy. This protein is closely related to domains in proteins encoded by wound-induced genes in plants. Analysis of the 1H n ...

    The solution structure of a 125-residue basic protein, barwin, has been determined using 1H nuclear magnetic resonance spectroscopy. This protein is closely related to domains in proteins encoded by wound-induced genes in plants. Analysis of the 1H nuclear Overhauser spectrum revealed the assignment of more than 1400 nuclear Overhauser effects. Twenty structures were calculated based on 676 nontrivial distance restraints, 152 torsion angle restraints (92 phi, 56 chi 1, and 4 omega for proline), and stereospecific assignments of 38 chiral centers, using distance geometry, simulated annealing, and restrained energy minimization. None of the distance restraints was violated by more than 0.5 A in any of the 20 structures, and none of the torsion angle restraints was violated by more than 1 degree in any of the structures. The RMS difference between the calculated and target interproton distance restraints is 0.033 A, and the average atomic RMS differences between the 20 structures and their geometric average are 1.23 A for backbone atoms and 1.73 A for all heavy atoms. The dominating structural feature of the protein is a well-defined four-stranded antiparallel beta-sheet, two parallel beta-sheets packed antiparallel to each other and four short alpha-helices. The binding site of barwin to the tetramer N-acetylglucosamine has been qualitatively investigated, and the dissociation constant of the complex has been determined using one-dimensional 1H nuclear magnetic resonance spectroscopy.


    Related Citations: 
    • The Secondary Structure in Solution of Barwin from Barley Seed Using 1H Nuclear Magnetic Resonance Spectroscopy
      Ludvigsen, S.,Poulsen, F.M.
      (1992) Biochemistry 31: 8771
    • Primary Structure of Barwin. A Barley Seed Protein Closely Related to the C-Terminal Domain of Proteins Encoded by Wound-Induced Plant Genes
      Svensson, B.,Svendsen, I.,Hojrup, P.,Roepstorff, P.,Ludvigsen, S.,Poulsen, F.M.
      (1992) Biochemistry 31: 8767


    Organizational Affiliation

    Carlsberg Laboratorium, Kemisk Afdeling, Copenhagen, Denmark.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
BARWIN, BASIC BARLEY SEED PROTEIN
A
125Hordeum vulgareN/A
Find proteins for P28814 (Hordeum vulgare)
Go to UniProtKB:  P28814
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Submitted: 20 
  • Olderado: 1BW3 Olderado
Software Package:
Software NamePurpose
X-PLORphasing
X-PLORrefinement
X-PLORmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 1992-07-06 
  • Released Date: 1993-10-31 
  • Deposition Author(s): Poulsen, F.M.

Revision History 

  • Version 1.0: 1993-10-31
    Type: Initial release
  • Version 1.1: 2008-03-24
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2017-11-29
    Type: Derived calculations, Other