1BDG
HEXOKINASE FROM SCHISTOSOMA MANSONI COMPLEXED WITH GLUCOSE
- PDB DOI: https://doi.org/10.2210/pdb1BDG/pdb
- Classification: HEXOKINASE
- Organism(s): Schistosoma mansoni
- Expression System: Escherichia coli
- Mutation(s): No 
- Deposited: 1998-05-08 Released: 1999-05-11 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.256 
- R-Value Work: 0.173 
- R-Value Observed: 0.173 
This is version 1.5 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
HEXOKINASE | 451 | Schistosoma mansoni | Mutation(s): 0  EC: 2.7.1.1 | ||
UniProt | |||||
Find proteins for Q26609 (Schistosoma mansoni) Explore Q26609  Go to UniProtKB:  Q26609 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q26609 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GLC Query on GLC | B [auth A] | alpha-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-DVKNGEFBSA-N | |||
SO4 Query on SO4 | C [auth A], D [auth A], E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.256 
- R-Value Work: 0.173 
- R-Value Observed: 0.173 
- Space Group: P 61 2 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 114.3 | α = 90 |
b = 114.3 | β = 90 |
c = 155.2 | γ = 120 |
Software Name | Purpose |
---|---|
R-AXIS | data collection |
R-AXIS | data reduction |
AMoRE | phasing |
X-PLOR | refinement |
R-AXIS | data scaling |
Entry History 
Deposition Data
- Released Date: 1999-05-11  Deposition Author(s): Mulichak, A.M., Garavito, R.M.
Revision History (Full details and data files)
- Version 1.0: 1999-05-11
Type: Initial release - Version 1.1: 2008-03-24
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.4: 2022-12-21
Changes: Database references, Structure summary - Version 1.5: 2023-08-09
Changes: Refinement description